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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00427
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00427
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-81
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.68 | 53.0 | 5.17e-01 | 84.6% | 92.0% |
| 3plsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 44.0 | 3.98e-01 | 71.8% | 84.6% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.63 | 47.0 | 4.24e-01 | 79.5% | 98.1% |
| 4amwA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.59 | 45.0 | 3.04e-01 | 83.3% | 45.0% |
| 5i4nA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 40.0 | 3.84e-01 | 71.8% | 89.1% |
| 5aq1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 40.0 | 2.73e-01 | 70.5% | 89.2% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 49.0 | 4.09e-01 | 100.0% | 85.9% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 40.0 | 2.70e-01 | 74.4% | 89.6% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.75e-01 | 73.1% | 95.6% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 40.0 | 3.07e-01 | 79.5% | 69.1% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 41.0 | 4.02e-01 | 79.5% | 98.8% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 39.0 | 3.50e-01 | 75.6% | 60.6% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 40.0 | 3.98e-01 | 80.8% | 100.0% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.53 | 43.0 | 3.10e-01 | 91.0% | 85.1% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.86e-01 | 73.1% | 95.4% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 41.0 | 3.31e-01 | 88.5% | 78.3% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.55e-01 | 98.7% | 88.2% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.52 | 39.0 | 3.87e-01 | 84.6% | 83.1% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 36.0 | 3.05e-01 | 74.4% | 72.0% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 41.0 | 3.02e-01 | 91.0% | 86.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 46.0 | 3.68e-01 | 100.0% | 73.5% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 36.0 | 3.24e-01 | 74.4% | 84.3% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.50 | 34.0 | 3.67e-01 | 96.2% | 84.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961460 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 45.0 | 3.67e-01 | 78.2% | 72.7% |
| 3272624 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.61 | 47.0 | 3.95e-01 | 82.1% | 91.5% |
| 3952896 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 40.0 | 3.49e-01 | 71.8% | 80.6% |
| 5027780 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.58 | 38.0 | 4.21e-01 | 100.0% | 88.3% |
| 3278140 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 39.0 | 3.58e-01 | 71.8% | 93.6% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 3.86e-01 | 73.1% | 65.9% |
| 2938507 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.57 | 39.0 | 3.46e-01 | 71.8% | 80.2% |
| 3937102 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 38.0 | 2.93e-01 | 70.5% | 45.6% |
| 152653 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 39.0 | 3.75e-01 | 73.1% | 95.6% |
| 5031294 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.55 | 43.0 | 3.34e-01 | 85.9% | 96.2% |
| 3313853 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 39.0 | 2.49e-01 | 75.6% | 38.1% |
| 3782925 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 39.0 | 3.71e-01 | 76.9% | 75.8% |
| 3506301 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 38.0 | 2.94e-01 | 74.4% | 67.6% |
| 3446774 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.53 | 38.0 | 3.83e-01 | 76.9% | 77.5% |
| 4114495 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.53 | 43.0 | 3.24e-01 | 91.0% | 83.8% |
| 3716709 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 3.27e-01 | 74.4% | 89.4% |
| 4524604 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.53 | 37.0 | 3.02e-01 | 73.1% | 41.3% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.52 | 35.0 | 3.52e-01 | 100.0% | 67.5% |
| 3541127 | 2.1.1.170 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 | 0.52 | 36.0 | 3.66e-01 | 71.8% | 78.7% |
| 4877991 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 38.0 | 3.52e-01 | 78.2% | 72.1% |
| 4969580 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.51 | 41.0 | 3.07e-01 | 91.0% | 86.4% |
| 3742583 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.51 | 41.0 | 3.01e-01 | 91.0% | 86.3% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 36.0 | 3.67e-01 | 100.0% | 76.0% |
| 4927342 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 36.0 | 3.47e-01 | 74.4% | 72.2% |
| 3808882 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.51 | 46.0 | 3.52e-01 | 100.0% | 67.4% |
| 3877730 | 2484.1.1.5 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 | 0.50 | 39.0 | 2.82e-01 | 97.4% | 28.7% |