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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00012
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00012
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-91
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07866.18 best | DUF1653 | 25.2 | 2.40e-05 | 56.7% | 74.2% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.74 | 56.0 | 6.10e-01 | 95.6% | 92.1% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 43.0 | 4.78e-01 | 96.7% | 94.3% |
| 3bg3A01 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.60 | 38.0 | 3.65e-01 | 87.8% | 56.4% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 37.0 | 4.10e-01 | 90.0% | 85.5% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 34.0 | 3.58e-01 | 85.6% | 65.4% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 33.0 | 3.84e-01 | 75.6% | 82.3% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.56 | 36.0 | 3.51e-01 | 87.8% | 57.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 41.0 | 4.43e-01 | 82.2% | 97.3% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.00e-01 | 95.6% | 79.5% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.55 | 42.0 | 4.61e-01 | 97.8% | 100.0% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 3.71e-01 | 95.6% | 56.4% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 4.13e-01 | 95.6% | 92.0% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 4.05e-01 | 98.9% | 100.0% |
| 2v14A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 40.0 | 3.52e-01 | 82.2% | 67.9% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 39.0 | 3.45e-01 | 82.2% | 52.1% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.52 | 42.0 | 4.29e-01 | 93.3% | 87.8% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 37.0 | 2.72e-01 | 76.7% | 61.6% |
| 1whjA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.51 | 40.0 | 3.87e-01 | 94.4% | 73.5% |
| 1zc0A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 43.0 | 3.11e-01 | 97.8% | 91.3% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.55e-01 | 81.1% | 76.7% |
| 1y7bA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 42.0 | 2.99e-01 | 96.7% | 75.4% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.50 | 35.0 | 3.55e-01 | 72.2% | 92.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 33.0 | 3.58e-01 | 88.9% | 84.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4051081 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.74 | 49.0 | 5.80e-01 | 94.4% | 100.0% |
| 331968 | 4.1.1.55 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1653 | 0.74 | 56.0 | 6.04e-01 | 95.6% | 89.7% |
| 3821751 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.70 | 49.0 | 5.18e-01 | 94.4% | 81.2% |
| 4423306 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.69 | 47.0 | 5.13e-01 | 97.8% | 84.0% |
| 4547406 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.69 | 48.0 | 5.09e-01 | 100.0% | 81.2% |
| 4077893 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 47.0 | 2.86e-01 | 98.9% | 11.9% |
| 4339993 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.68 | 47.0 | 4.74e-01 | 100.0% | 71.1% |
| 4851967 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.67 | 45.0 | 5.24e-01 | 95.6% | 100.0% |
| 4977206 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 38.0 | 4.55e-01 | 95.6% | 88.3% |
| 3951961 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.64 | 48.0 | 4.79e-01 | 97.8% | 75.8% |
| 4045576 | 4.1.1.161 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4178 | 0.63 | 44.0 | 5.09e-01 | 93.3% | 100.0% |
| 4335575 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 49.0 | 2.76e-01 | 98.9% | 7.9% |
| 3587082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 35.0 | 4.28e-01 | 82.2% | 92.6% |
| 1557343 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.62 | 43.0 | 4.78e-01 | 96.7% | 94.3% |
| 3511007 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.61 | 44.0 | 4.02e-01 | 95.6% | 57.5% |
| 5053224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 39.0 | 4.65e-01 | 92.2% | 100.0% |
| 3553413 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.60 | 44.0 | 4.52e-01 | 95.6% | 82.4% |
| 3328647 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.59 | 43.0 | 4.49e-01 | 100.0% | 81.2% |
| 3985617 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 38.0 | 4.20e-01 | 88.9% | 84.3% |
| 4641867 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.58 | 42.0 | 3.47e-01 | 75.6% | 65.6% |
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.58 | 40.0 | 3.87e-01 | 94.4% | 64.0% |
| 4798576 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 36.0 | 3.36e-01 | 76.7% | 54.6% |
| 1112010 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.55 | 41.0 | 4.43e-01 | 82.2% | 97.3% |
| 3387925 | 243.4.1.0 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like | 0.55 | 36.0 | 4.16e-01 | 85.6% | 93.8% |
| 4012945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 43.0 | 4.62e-01 | 94.4% | 100.0% |
| 3720660 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 3.97e-01 | 91.1% | 85.3% |
| 3917043 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.54 | 42.0 | 3.38e-01 | 95.6% | 42.9% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 42.0 | 3.65e-01 | 83.3% | 68.1% |
| 3189521 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.53 | 45.0 | 4.66e-01 | 97.8% | 97.6% |
| 4427477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 40.0 | 4.02e-01 | 82.2% | 96.8% |
| 3842361 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.53 | 48.0 | 4.79e-01 | 100.0% | 97.9% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 42.0 | 3.92e-01 | 87.8% | 71.3% |
| 3935939 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 38.0 | 2.69e-01 | 78.9% | 58.4% |
| 3623084 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 44.0 | 3.91e-01 | 91.1% | 92.0% |
| 591 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.52 | 39.0 | 4.16e-01 | 97.8% | 93.4% |
| 3961706 | 4.1.1.161 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4178 | 0.52 | 34.0 | 3.83e-01 | 86.7% | 93.8% |
| 4937122 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.52 | 37.0 | 4.07e-01 | 85.6% | 90.7% |
| 3388362 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 46.0 | 2.72e-01 | 97.8% | 69.8% |
| 3595651 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.51 | 42.0 | 3.81e-01 | 98.9% | 66.7% |
| 5070387 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 36.0 | 3.86e-01 | 85.6% | 88.0% |
| 3784770 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 40.0 | 4.32e-01 | 95.6% | 100.0% |
| 3798524 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 39.0 | 3.59e-01 | 81.1% | 73.9% |
| 4486857 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 39.0 | 3.37e-01 | 81.1% | 66.7% |
| 3924122 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.50 | 41.0 | 2.91e-01 | 94.4% | 75.2% |