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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00032

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00032

Identity

Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 high residues 58-111
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w27A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.70 61.0 4.01e-01 100.0% 37.9%
1yrwA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.64 46.0 3.94e-01 79.6% 92.6%
2o6yA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.61 52.0 3.65e-01 100.0% 35.9%
3unvA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.60 52.0 3.59e-01 100.0% 43.5%
7tqrA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.59 50.0 3.53e-01 100.0% 44.4%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 50.0 3.76e-01 96.3% 69.7%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 46.0 3.19e-01 94.4% 53.6%
2wtmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 39.0 2.55e-01 74.1% 80.8%
3f61A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 42.0 3.12e-01 90.7% 74.3%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.54 48.0 3.39e-01 100.0% 69.2%
8k5lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 2.95e-01 92.6% 80.8%
3ukhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 37.0 2.20e-01 77.8% 91.3%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 40.0 3.07e-01 92.6% 69.0%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 35.0 2.91e-01 81.5% 38.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4118933 4952.1.1.2 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.70 61.0 4.81e-01 100.0% 80.0%
4023504 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.67 59.0 3.87e-01 100.0% 38.7%
3575471 260.1.1.0 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat 0.61 53.0 3.59e-01 98.1% 42.9%
3716844 270.1.1.0 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.61 46.0 3.48e-01 83.3% 90.0%
163107 4952.1.1.2 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.61 52.0 3.65e-01 100.0% 35.9%
3751836 3134.1.1.1 a+b two layers › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › UBD 0.60 44.0 3.82e-01 98.1% 49.4%
3392505 11.1.1.633 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA0319 0.60 48.0 3.87e-01 94.4% 56.7%
3631703 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 51.0 3.71e-01 98.1% 55.0%
3960082 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.58 49.0 2.96e-01 100.0% 22.1%
4020773 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.57 50.0 3.34e-01 100.0% 45.8%
3476114 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 45.0 2.81e-01 100.0% 42.7%
4316812 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.54 44.0 2.94e-01 98.1% 71.7%
3670347 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 46.0 4.12e-01 100.0% 87.3%
3987902 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 34.0 3.63e-01 79.6% 77.8%
3392866 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.53 43.0 3.75e-01 98.1% 91.6%
5077678 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.53 43.0 2.99e-01 100.0% 67.2%
3250586 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.04e-01 96.3% 51.5%
4182115 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.50 39.0 3.03e-01 98.1% 95.6%
5053460 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.50 39.0 2.74e-01 94.4% 89.5%
5039184 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.50 40.0 2.52e-01 100.0% 26.3%
D3 medium residues 234-403
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k62A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 63.0 4.70e-01 97.6% 66.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 62.0 4.77e-01 97.6% 65.5%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 4.84e-01 97.6% 71.4%
3a6pA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 61.0 3.74e-01 100.0% 25.5%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 61.0 5.53e-01 100.0% 95.2%
1bk6A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 4.42e-01 97.6% 65.9%
1xqrA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 60.0 5.13e-01 98.8% 93.6%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.64 38.0 4.63e-01 78.2% 92.4%
8gpvA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.64 45.0 5.05e-01 85.9% 94.6%
4cruB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 58.0 5.00e-01 100.0% 95.6%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 59.0 4.61e-01 100.0% 61.8%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 58.0 4.79e-01 100.0% 85.7%
1g3jC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 57.0 4.25e-01 100.0% 52.6%
2ouxA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.62 45.0 5.10e-01 95.9% 99.2%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 50.0 4.65e-01 88.2% 95.9%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.60 36.0 4.64e-01 70.6% 100.0%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.59 54.0 4.25e-01 100.0% 67.4%
4c0eA02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 49.0 4.50e-01 94.7% 84.9%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.56 49.0 4.00e-01 97.1% 59.5%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 38.0 4.19e-01 72.4% 94.3%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 46.0 4.18e-01 91.2% 86.2%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 3.79e-01 95.3% 65.9%
2ifuD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 44.0 3.85e-01 97.1% 89.3%
1mivA02 1.10.110.30 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › 0.50 29.0 3.65e-01 78.2% 99.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927360 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.69 54.0 5.72e-01 85.9% 92.0%
3186734 109.4.1.1259 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.68 50.0 4.01e-01 75.9% 53.4%
3365340 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.68 62.0 4.85e-01 100.0% 67.9%
5050386 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.68 63.0 4.36e-01 100.0% 32.9%
3497154 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 63.0 5.21e-01 100.0% 76.9%
3827993 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 59.0 4.38e-01 97.1% 56.3%
3787559 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.65 58.0 3.94e-01 96.5% 37.8%
3430065 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.65 47.0 4.42e-01 74.1% 71.2%
4513021 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 48.0 4.91e-01 77.6% 96.4%
3360043 109.4.1.1396 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO5 0.64 58.0 4.80e-01 98.8% 81.3%
3390412 109.4.1.158 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.63 51.0 4.13e-01 87.1% 51.0%
3719363 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.63 50.0 4.18e-01 84.7% 74.8%
3317783 109.4.1.361 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 0.63 56.0 4.48e-01 100.0% 72.7%
3827814 109.4.1.408 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT,IBN_N 0.62 56.0 5.01e-01 99.4% 95.1%
3443697 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.73e-01 98.8% 83.4%
3690261 109.4.1.134 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD 0.61 55.0 4.21e-01 100.0% 72.8%
5052380 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.60 51.0 5.32e-01 92.4% 98.7%
4648923 109.4.1.337 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N 0.60 54.0 5.21e-01 99.4% 100.0%
3810902 109.4.1.575 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 0.58 45.0 4.60e-01 82.4% 84.7%
3785685 109.4.1.58 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.57 48.0 4.10e-01 91.8% 74.3%
3440497 109.4.1.494 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Npa1 0.57 45.0 4.65e-01 82.9% 96.9%
4411778 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 51.0 4.28e-01 100.0% 67.1%
3712177 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 3.92e-01 88.2% 65.6%
3472715 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 39.0 3.83e-01 71.8% 96.3%
3704892 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.82e-01 96.5% 74.4%
D4 medium residues 404-494
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.61 45.0 4.92e-01 89.0% 97.3%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.60 44.0 3.71e-01 78.0% 96.9%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 40.0 3.90e-01 78.0% 63.3%
1n1bB02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 48.0 3.34e-01 87.9% 48.2%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 40.0 3.23e-01 75.8% 81.7%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 3.19e-01 92.3% 86.4%
3twqA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 42.0 3.55e-01 92.3% 93.3%
3wuhA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 35.0 2.98e-01 74.7% 79.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973458 611.4.1.2 alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C 0.57 31.0 2.74e-01 83.5% 36.2%
3597777 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.96e-01 92.3% 90.0%
3590987 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.55 32.0 3.49e-01 86.8% 68.0%
3659978 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.52 36.0 3.60e-01 72.5% 100.0%
4467862 603.5.1.0 alpha bundles › STAT-like › FlgN-like › FlgN-like 0.50 37.0 3.23e-01 79.1% 82.1%