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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00038
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00038
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-84
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 44.0 | 4.80e-01 | 71.2% | 78.8% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 55.0 | 3.45e-01 | 100.0% | 48.5% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 43.0 | 3.50e-01 | 72.5% | 59.4% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.61 | 43.0 | 3.48e-01 | 72.5% | 64.9% |
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.60 | 48.0 | 4.51e-01 | 87.5% | 89.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.49e-01 | 80.0% | 90.5% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.59 | 39.0 | 4.48e-01 | 75.0% | 98.2% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 40.0 | 4.01e-01 | 72.5% | 83.1% |
| 3o4oC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 4.05e-01 | 82.5% | 78.5% |
| 5h1kB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 48.0 | 3.24e-01 | 96.2% | 65.0% |
| 5lddC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 34.0 | 2.69e-01 | 71.2% | 28.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 4.28e-01 | 81.2% | 87.9% |
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.57 | 43.0 | 4.13e-01 | 83.7% | 70.1% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.57 | 42.0 | 4.14e-01 | 85.0% | 74.4% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.56 | 42.0 | 4.25e-01 | 81.2% | 83.5% |
| 3lmlA01 | 3.10.450.690 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 3.70e-01 | 81.2% | 62.0% |
| 4oc8A02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 43.0 | 3.46e-01 | 86.3% | 78.5% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.56 | 44.0 | 4.02e-01 | 85.0% | 79.8% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.55 | 43.0 | 3.24e-01 | 83.7% | 63.5% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 42.0 | 3.56e-01 | 85.0% | 100.0% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 42.0 | 4.00e-01 | 85.0% | 81.9% |
| 7jrmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 4.02e-01 | 77.5% | 83.8% |
| 3oq3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.74e-01 | 82.5% | 79.0% |
| 4fchA01 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.29e-01 | 72.5% | 78.9% |
| 3wo4C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.79e-01 | 81.2% | 81.3% |
| 5w17A01 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.52 | 41.0 | 3.35e-01 | 86.3% | 61.3% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.66e-01 | 88.7% | 51.2% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.80e-01 | 98.8% | 30.8% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 34.0 | 2.84e-01 | 81.2% | 37.7% |
| 1y1uA02 | 2.60.40.630 | Mainly Beta › Sandwich › Immunoglobulin-like › STAT transcription factor, DNA-binding domain | 0.51 | 38.0 | 3.30e-01 | 82.5% | 86.9% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 42.0 | 3.00e-01 | 91.3% | 69.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993916 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.69 | 52.0 | 4.65e-01 | 85.0% | 58.2% |
| 5080172 | 243.3.1.59 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GvpO | 0.68 | 51.0 | 5.06e-01 | 80.0% | 78.8% |
| 3181024 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.67 | 48.0 | 4.10e-01 | 76.2% | 91.5% |
| 4568161 | 283.2.1.18 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Lipoprotein_17 | 0.66 | 48.0 | 4.86e-01 | 80.0% | 77.5% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 45.0 | 4.98e-01 | 80.0% | 87.7% |
| 3624657 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.66 | 52.0 | 4.62e-01 | 91.3% | 60.9% |
| 3669518 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.65 | 52.0 | 4.59e-01 | 86.3% | 63.5% |
| 4940436 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.65 | 50.0 | 4.82e-01 | 83.7% | 73.3% |
| 2764890 | 4322.1.1.1 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like › Flu_NP | 0.62 | 45.0 | 3.85e-01 | 77.5% | 64.2% |
| 5034443 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 53.0 | 3.40e-01 | 96.2% | 43.0% |
| 4028425 | 220.1.1.286 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 | 0.61 | 43.0 | 3.72e-01 | 75.0% | 79.2% |
| 3997581 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 50.0 | 3.30e-01 | 93.8% | 36.9% |
| 3955541 | 2003.1.2.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_7 | 0.59 | 50.0 | 4.18e-01 | 92.5% | 95.6% |
| 4027469 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.58 | 46.0 | 3.07e-01 | 86.3% | 39.1% |
| 3629240 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.58 | 42.0 | 3.80e-01 | 76.2% | 90.0% |
| 4646762 | 3480.1.1.1 ↗ | a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 | 0.58 | 42.0 | 4.18e-01 | 82.5% | 72.9% |
| 1229008 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.57 | 40.0 | 3.98e-01 | 73.8% | 75.0% |
| 2165073 | 4322.1.1.0 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like | 0.57 | 42.0 | 3.71e-01 | 78.8% | 62.2% |
| 3749631 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.57 | 34.0 | 3.16e-01 | 82.5% | 43.8% |
| 3282535 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.56 | 45.0 | 3.17e-01 | 87.5% | 63.5% |
| 3520475 | 922.1.1.26 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › Adt-1 | 0.56 | 46.0 | 3.82e-01 | 92.5% | 72.7% |
| 1147702 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.56 | 43.0 | 3.47e-01 | 86.3% | 78.9% |
| 147044 | 3256.1.1.1 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › BACOVA_N | 0.56 | 35.0 | 4.10e-01 | 70.0% | 96.2% |
| 167841 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.56 | 38.0 | 4.20e-01 | 75.0% | 95.0% |
| 4927644 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 43.0 | 3.63e-01 | 86.3% | 97.9% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.55 | 46.0 | 3.81e-01 | 97.5% | 50.7% |
| 4965501 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 41.0 | 4.00e-01 | 82.5% | 72.2% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 37.0 | 3.89e-01 | 73.8% | 78.6% |
| 3579778 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.54 | 38.0 | 3.84e-01 | 86.3% | 73.8% |
| 3269786 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.53 | 39.0 | 3.76e-01 | 80.0% | 82.1% |
| 3412934 | 5.1.4.277 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 | 0.53 | 45.0 | 2.93e-01 | 96.2% | 23.5% |
| 3519117 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 3.09e-01 | 83.7% | 88.4% |
| 4026812 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.52 | 35.0 | 2.87e-01 | 83.7% | 35.6% |
| 4954981 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.52 | 36.0 | 2.88e-01 | 73.8% | 71.8% |
| 3451905 | 5015.1.1.0 ↗ | extended segments › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex › PetM subunit of the cytochrome b6f complex | 0.52 | 31.0 | 3.65e-01 | 75.0% | 96.0% |
| 3396847 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 44.0 | 3.80e-01 | 95.0% | 67.2% |
| 4228218 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.51 | 35.0 | 3.00e-01 | 70.0% | 45.1% |
| 6327 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.51 | 34.0 | 2.84e-01 | 81.2% | 37.7% |
| 3981106 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.51 | 35.0 | 2.92e-01 | 83.7% | 38.7% |
D2
medium
residues 85-135
Domain cluster:
representative