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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00041
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00041
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-138
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00165__D9-99
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dkjA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 42.0 | 3.19e-01 | 71.2% | 98.3% |
| 2ifxA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 29.0 | 3.45e-01 | 74.4% | 67.0% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 29.0 | 3.60e-01 | 73.6% | 79.7% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 32.0 | 3.67e-01 | 72.0% | 73.4% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 31.0 | 3.65e-01 | 74.4% | 77.3% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 31.0 | 3.61e-01 | 73.6% | 77.3% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 28.0 | 3.20e-01 | 73.6% | 63.7% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 27.0 | 3.30e-01 | 71.2% | 72.2% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.54 | 31.0 | 3.61e-01 | 72.8% | 80.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.54 | 31.0 | 3.41e-01 | 72.8% | 69.8% |
| 4mt1A03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.54 | 31.0 | 3.48e-01 | 72.8% | 72.4% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 30.0 | 3.34e-01 | 71.2% | 70.2% |
| 2f8mA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 28.0 | 3.32e-01 | 71.2% | 75.9% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.52 | 32.0 | 3.47e-01 | 73.6% | 73.3% |
| 1xtzA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 28.0 | 3.35e-01 | 73.6% | 77.4% |
| 1vkvA01 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.52 | 37.0 | 3.33e-01 | 74.4% | 87.8% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 37.0 | 3.19e-01 | 73.6% | 99.5% |
| 3qa8G01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 35.0 | 2.70e-01 | 70.4% | 43.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4554366 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.64 | 34.0 | 3.60e-01 | 73.6% | 55.7% |
| 3550113 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.62 | 34.0 | 3.42e-01 | 72.8% | 51.2% |
| 3759055 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.62 | 33.0 | 3.40e-01 | 72.8% | 50.4% |
| 3577533 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 33.0 | 3.39e-01 | 73.6% | 53.3% |
| 3691930 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 31.0 | 3.84e-01 | 72.8% | 84.6% |
| 5052024 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 31.0 | 3.57e-01 | 73.6% | 74.1% |
| 3648646 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.57 | 29.0 | 3.41e-01 | 70.4% | 71.2% |
| 4062697 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 42.0 | 3.95e-01 | 77.6% | 97.3% |
| 4554484 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 42.0 | 4.00e-01 | 78.4% | 95.2% |
| 4950064 | 327.16.1.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275 | 0.55 | 26.0 | 3.26e-01 | 70.4% | 75.7% |
| 3494476 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 30.0 | 3.47e-01 | 71.2% | 76.5% |
| 5060761 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.54 | 31.0 | 3.31e-01 | 72.8% | 63.8% |
| 4032330 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.53 | 28.0 | 3.18e-01 | 71.2% | 65.3% |
| 3600590 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 29.0 | 3.16e-01 | 73.6% | 61.9% |
| 2797934 | 304.113.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 | 0.53 | 33.0 | 3.40e-01 | 73.6% | 66.4% |
| 4665957 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.51 | 27.0 | 2.97e-01 | 72.0% | 60.0% |
| 3802659 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.51 | 29.0 | 3.15e-01 | 72.8% | 64.8% |
| 1312370 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.51 | 32.0 | 3.34e-01 | 73.6% | 67.5% |
| 3875700 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 27.0 | 3.27e-01 | 71.2% | 78.8% |
| 3642268 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.50 | 33.0 | 3.38e-01 | 76.0% | 68.3% |
| 3823835 | 304.4.1.78 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036 | 0.50 | 30.0 | 3.28e-01 | 72.8% | 70.5% |