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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00044
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00044
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
rep: OR257569.1__WNL50784.1__RPALISO_197__00166__D4-62
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.77 | 41.0 | 4.77e-01 | 75.8% | 72.7% |
| 4fm4B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 4.29e-01 | 82.3% | 56.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 47.0 | 4.03e-01 | 90.3% | 53.6% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.60 | 49.0 | 3.31e-01 | 91.9% | 73.6% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 3.44e-01 | 80.6% | 41.9% |
| 4i5sA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 39.0 | 3.45e-01 | 80.6% | 44.9% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 47.0 | 4.17e-01 | 95.2% | 62.2% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 35.0 | 3.24e-01 | 75.8% | 45.7% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 48.0 | 3.99e-01 | 98.4% | 73.0% |
| 5i4nA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 42.0 | 3.75e-01 | 83.9% | 83.7% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.55 | 35.0 | 2.86e-01 | 80.6% | 32.0% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 41.0 | 3.32e-01 | 83.9% | 44.4% |
| 1vwxB03 | 3.30.1430.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › | 0.54 | 46.0 | 3.75e-01 | 96.8% | 95.1% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.23e-01 | 93.5% | 39.5% |
| 3b42A00 | 3.30.450.290 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 38.0 | 3.13e-01 | 77.4% | 37.3% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.90e-01 | 95.2% | 59.0% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 40.0 | 3.01e-01 | 79.0% | 72.4% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.54 | 36.0 | 3.89e-01 | 80.6% | 95.7% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 38.0 | 2.94e-01 | 77.4% | 47.3% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 44.0 | 3.76e-01 | 100.0% | 74.3% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 44.0 | 3.50e-01 | 100.0% | 56.6% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.52 | 34.0 | 3.08e-01 | 74.2% | 44.1% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 34.0 | 3.10e-01 | 79.0% | 46.1% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.52 | 43.0 | 3.80e-01 | 100.0% | 88.5% |
| 5oj2B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.72e-01 | 93.5% | 99.0% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 34.0 | 3.49e-01 | 83.9% | 71.2% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 40.0 | 3.20e-01 | 98.4% | 70.1% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489971 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 56.0 | 4.61e-01 | 96.8% | 53.3% |
| 4241274 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.67 | 48.0 | 2.87e-01 | 75.8% | 58.8% |
| 4223395 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.66 | 47.0 | 2.87e-01 | 79.0% | 11.5% |
| 3624550 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.65 | 56.0 | 4.32e-01 | 100.0% | 80.7% |
| 3610382 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.65 | 49.0 | 3.73e-01 | 83.9% | 68.1% |
| 3582577 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 52.0 | 4.17e-01 | 93.5% | 80.0% |
| 3517335 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 44.0 | 3.66e-01 | 77.4% | 46.1% |
| 3473720 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 52.0 | 4.33e-01 | 95.2% | 55.5% |
| 3405436 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 53.0 | 4.41e-01 | 100.0% | 59.1% |
| 3919375 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 41.0 | 3.62e-01 | 75.8% | 45.0% |
| 3968190 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 48.0 | 4.27e-01 | 96.8% | 58.9% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.60 | 40.0 | 4.13e-01 | 77.4% | 73.3% |
| 3730893 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 49.0 | 4.35e-01 | 93.5% | 81.1% |
| 3645656 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.60 | 43.0 | 3.98e-01 | 75.8% | 72.5% |
| 3935534 | 375.1.9.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › SANTA | 0.60 | 52.0 | 4.11e-01 | 100.0% | 94.1% |
| 3622254 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 46.0 | 3.76e-01 | 87.1% | 50.4% |
| 4120121 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.59 | 43.0 | 3.58e-01 | 77.4% | 78.2% |
| 4396101 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.59 | 43.0 | 2.60e-01 | 77.4% | 63.2% |
| 4466666 | 3880.1.1.2 ↗ | beta barrels › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glyco_hydro127C | 0.59 | 43.0 | 3.49e-01 | 79.0% | 49.6% |
| 4629438 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.58 | 42.0 | 3.52e-01 | 77.4% | 79.1% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 48.0 | 3.77e-01 | 95.2% | 45.0% |
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.58 | 39.0 | 3.11e-01 | 71.0% | 73.8% |
| 3896233 | 331.3.1.72 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › FANCAA | 0.57 | 41.0 | 3.43e-01 | 75.8% | 56.4% |
| 4313221 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.57 | 44.0 | 2.62e-01 | 85.5% | 92.6% |
| 3965166 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 47.0 | 4.26e-01 | 96.8% | 64.4% |
| 3705822 | 304.109.1.12 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › DUF7762 | 0.57 | 41.0 | 3.47e-01 | 77.4% | 100.0% |
| 3729350 | 5.1.4.411 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 | 0.56 | 44.0 | 2.69e-01 | 85.5% | 21.9% |
| 3701885 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 42.0 | 3.18e-01 | 80.6% | 53.3% |
| 3552839 | 11.1.1.795 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA | 0.56 | 37.0 | 3.13e-01 | 75.8% | 38.2% |
| 4942338 | 815.1.1.1 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 | 0.55 | 39.0 | 3.44e-01 | 77.4% | 55.0% |
| 4126255 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.55 | 39.0 | 2.59e-01 | 80.6% | 17.1% |
| 4608466 | 2003.1.5.71 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 | 0.55 | 41.0 | 2.69e-01 | 85.5% | 73.3% |
| 3512104 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.54 | 37.0 | 3.89e-01 | 79.0% | 83.6% |
| 4968231 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.54 | 44.0 | 2.76e-01 | 95.2% | 89.1% |
| 3707076 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.54 | 39.0 | 2.96e-01 | 79.0% | 32.9% |
| 4883064 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 36.0 | 2.50e-01 | 71.0% | 41.2% |
| 3611835 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.53 | 38.0 | 2.90e-01 | 79.0% | 35.4% |
| 3465939 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.53 | 41.0 | 2.56e-01 | 83.9% | 14.2% |
| 3246209 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.53 | 38.0 | 2.87e-01 | 80.6% | 32.8% |
| 3733818 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 44.0 | 2.93e-01 | 96.8% | 62.9% |
| 3484705 | 220.1.1.61 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 | 0.52 | 43.0 | 3.40e-01 | 95.2% | 42.1% |
| 3419015 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 34.0 | 3.67e-01 | 77.4% | 82.0% |
| 4034488 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 41.0 | 3.22e-01 | 87.1% | 84.4% |
| 4666185 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 37.0 | 2.32e-01 | 77.4% | 60.7% |
| 5049631 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.06e-01 | 93.5% | 36.4% |
| 4652297 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 37.0 | 2.70e-01 | 79.0% | 61.5% |
| 4103146 | 241.1.1.17 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › RM5_Med14 | 0.52 | 40.0 | 3.44e-01 | 87.1% | 53.3% |
| 3301984 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 34.0 | 3.61e-01 | 77.4% | 80.0% |
| 3635512 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 43.0 | 3.35e-01 | 100.0% | 70.3% |
| 4544858 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 36.0 | 2.24e-01 | 77.4% | 60.7% |
| 3765989 | 223.1.1.120 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1, VWA_N, PF30670 | 0.51 | 41.0 | 2.75e-01 | 98.4% | 51.7% |
| 3576101 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 37.0 | 2.90e-01 | 80.6% | 48.0% |
| 3467519 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.50 | 42.0 | 3.61e-01 | 95.2% | 57.1% |
| 3457734 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.50 | 36.0 | 2.74e-01 | 79.0% | 70.6% |