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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00060
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00060
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-121
Domain cluster:
rep: NC_025830.1__YP_009111233.1__Av05_00159__00159__D67-137
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.62 | 47.0 | 2.79e-01 | 86.6% | 10.3% |
| 4n0rA03 | 2.60.40.3950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 46.0 | 4.22e-01 | 82.9% | 80.9% |
| 1vhvA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 51.0 | 4.32e-01 | 97.6% | 79.1% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 43.0 | 3.92e-01 | 79.3% | 83.3% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 43.0 | 3.74e-01 | 84.1% | 51.9% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 43.0 | 3.99e-01 | 84.1% | 94.5% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 48.0 | 4.39e-01 | 97.6% | 93.8% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 43.0 | 3.72e-01 | 84.1% | 97.0% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.55 | 42.0 | 3.58e-01 | 81.7% | 71.4% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 41.0 | 3.03e-01 | 82.9% | 40.3% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 3.65e-01 | 84.1% | 57.3% |
| 2qcsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 41.0 | 3.58e-01 | 84.1% | 53.6% |
| 2ipiA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 41.0 | 3.12e-01 | 87.8% | 49.4% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.53 | 41.0 | 3.76e-01 | 86.6% | 63.1% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 39.0 | 3.45e-01 | 84.1% | 54.1% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 38.0 | 3.56e-01 | 84.1% | 93.7% |
| 2pbzA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 35.0 | 2.86e-01 | 73.2% | 98.3% |
| 3gydA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 2.99e-01 | 84.1% | 37.1% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 44.0 | 3.69e-01 | 98.8% | 72.4% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 38.0 | 3.26e-01 | 98.8% | 48.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1558579 | 274.1.1.17 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › CofB_pilin_dom | 0.61 | 52.0 | 3.84e-01 | 98.8% | 68.1% |
| 3211468 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.60 | 47.0 | 3.74e-01 | 85.4% | 52.9% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.58 | 45.0 | 3.95e-01 | 84.1% | 95.2% |
| 1937720 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.57 | 49.0 | 4.41e-01 | 97.6% | 90.8% |
| 2807729 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.57 | 44.0 | 3.62e-01 | 85.4% | 45.4% |
| 3964762 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.56 | 49.0 | 4.31e-01 | 98.8% | 87.2% |
| 3164922 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.55 | 42.0 | 3.70e-01 | 84.1% | 55.0% |
| 3322697 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.55 | 34.0 | 3.38e-01 | 100.0% | 58.8% |
| 2323850 | 4031.1.1.0 ↗ | a+b three layers › Nigritoxin middle domain › Nigritoxin middle domain › Nigritoxin middle domain | 0.55 | 45.0 | 3.59e-01 | 95.1% | 89.8% |
| 4009159 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.55 | 41.0 | 3.55e-01 | 84.1% | 50.8% |
| 3386725 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 41.0 | 3.60e-01 | 84.1% | 53.6% |
| 3498341 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 41.0 | 3.77e-01 | 84.1% | 60.9% |
| 4521662 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.54 | 45.0 | 4.08e-01 | 97.6% | 92.5% |
| 3199688 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.54 | 46.0 | 2.97e-01 | 100.0% | 46.5% |
| None | — | 0.54 | 46.0 | 3.00e-01 | 100.0% | 51.9% | |
| 3795021 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 41.0 | 3.29e-01 | 84.1% | 40.9% |
| None | — | 0.53 | 45.0 | 2.89e-01 | 100.0% | 62.3% | |
| 3534443 | 221.1.1.12 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD | 0.53 | 38.0 | 3.81e-01 | 76.8% | 88.2% |
| None | — | 0.53 | 40.0 | 2.52e-01 | 85.4% | 13.7% | |
| 3738602 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 45.0 | 2.89e-01 | 100.0% | 62.2% |
| 3520108 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 40.0 | 3.41e-01 | 84.1% | 47.6% |
| 3694201 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.53 | 40.0 | 3.45e-01 | 82.9% | 75.6% |
| 3929801 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.53 | 38.0 | 3.65e-01 | 76.8% | 96.8% |
| 3740728 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 38.0 | 3.81e-01 | 78.0% | 98.8% |
| 3405565 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.52 | 37.0 | 3.63e-01 | 76.8% | 94.7% |
| 3599628 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 45.0 | 3.66e-01 | 97.6% | 69.7% |
| 4020774 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.51 | 39.0 | 3.44e-01 | 82.9% | 83.2% |
| 3855823 | 221.1.1.155 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_ISOC1_N | 0.51 | 38.0 | 3.88e-01 | 79.3% | 90.0% |
| 3667379 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.51 | 36.0 | 3.19e-01 | 97.6% | 47.7% |
| 3495654 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 38.0 | 3.69e-01 | 80.5% | 92.6% |
| 3266767 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 38.0 | 3.41e-01 | 82.9% | 75.2% |
| 4942276 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 37.0 | 3.63e-01 | 85.4% | 71.1% |
| 4012187 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 36.0 | 2.89e-01 | 78.0% | 45.9% |
| 3940556 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 37.0 | 3.38e-01 | 78.0% | 66.4% |
| None | — | 0.50 | 38.0 | 2.80e-01 | 82.9% | 41.2% | |
| 3592991 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 38.0 | 3.70e-01 | 84.1% | 88.4% |
| 3310183 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 37.0 | 2.41e-01 | 82.9% | 21.0% |
| 3682599 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 38.0 | 2.39e-01 | 82.9% | 20.0% |