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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00085

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00085

Identity

Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-54
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 42.3 8.00e-11 91.3% 90.7%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.94 85.0 8.51e-01 97.8% 97.8%
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.93 84.0 7.35e-01 100.0% 68.7%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.93 84.0 7.13e-01 100.0% 65.8%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.85 75.0 7.36e-01 100.0% 93.9%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.84 72.0 7.02e-01 100.0% 88.2%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.81 68.0 6.72e-01 100.0% 90.0%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.80 67.0 6.67e-01 100.0% 91.7%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.80 69.0 5.86e-01 100.0% 59.7%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 62.0 5.52e-01 89.1% 77.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 66.0 5.30e-01 100.0% 56.8%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 56.0 5.33e-01 87.0% 96.4%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.99e-01 84.8% 98.3%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 5.15e-01 87.0% 96.2%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 4.27e-01 89.1% 51.5%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 54.0 4.77e-01 87.0% 77.6%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.93e-01 89.1% 95.2%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.24e-01 91.3% 54.8%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.29e-01 91.3% 58.1%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 55.0 4.48e-01 100.0% 54.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.04e-01 91.3% 60.6%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.36e-01 91.3% 83.3%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 51.0 4.41e-01 89.1% 75.3%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 50.0 4.35e-01 89.1% 73.6%
2x3eA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 48.0 3.29e-01 87.0% 78.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.35e-01 95.7% 89.3%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.09e-01 91.3% 77.9%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.09e-01 87.0% 75.0%
1repC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.52e-01 87.0% 65.9%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 4.04e-01 87.0% 83.3%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 45.0 4.09e-01 89.1% 80.0%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.58 45.0 2.97e-01 87.0% 21.2%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.57e-01 91.3% 61.5%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.55 43.0 3.21e-01 100.0% 80.3%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969916 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.98 90.0 7.61e-01 100.0% 64.3%
4118675 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.98 88.0 8.95e-01 97.8% 97.8%
3417561 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 5.36e-01 100.0% 15.6%
2124917 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 5.96e-01 100.0% 28.6%
2035755 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 89.0 6.67e-01 100.0% 45.5%
2047861 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 90.0 8.25e-01 100.0% 79.3%
4249176 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 89.0 7.98e-01 100.0% 75.0%
3165071 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 88.0 8.24e-01 100.0% 81.8%
3974521 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 87.0 7.86e-01 100.0% 75.0%
4461167 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 88.0 7.64e-01 100.0% 69.2%
4205026 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 87.0 7.62e-01 100.0% 69.2%
3501971 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 87.0 7.84e-01 100.0% 75.0%
4448562 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 83.0 7.72e-01 95.7% 78.2%
3636417 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.95 88.0 8.34e-01 100.0% 90.6%
3985839 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 86.0 7.31e-01 100.0% 64.3%
3337328 101.15.1.14 alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.95 86.0 5.09e-01 100.0% 15.8%
3838194 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 84.0 8.52e-01 97.8% 97.8%
4680476 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 87.0 7.43e-01 100.0% 65.7%
3458171 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 7.62e-01 100.0% 70.8%
3655335 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 5.60e-01 100.0% 27.3%
3898121 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 7.98e-01 100.0% 81.8%
3248434 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 8.52e-01 100.0% 98.0%
3452845 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 7.97e-01 100.0% 81.8%
3381619 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 5.13e-01 100.0% 16.7%
3981327 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 88.0 8.28e-01 100.0% 85.2%
3464064 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 6.76e-01 100.0% 52.9%
2074716 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 8.37e-01 100.0% 90.2%
3636424 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 8.12e-01 100.0% 87.3%
3185732 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 8.00e-01 100.0% 94.5%
3190144 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 8.50e-01 100.0% 93.9%
4500818 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 8.24e-01 100.0% 92.3%
3426433 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 7.75e-01 100.0% 76.7%
3234671 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 8.11e-01 100.0% 83.6%
3324708 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 7.72e-01 100.0% 76.7%
4379136 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 6.21e-01 100.0% 41.7%
4137479 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 6.85e-01 100.0% 54.1%
2124476 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 84.0 5.87e-01 100.0% 34.1%
4022922 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 7.97e-01 100.0% 83.6%
4023232 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.92 85.0 7.67e-01 100.0% 80.0%
3821115 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 86.0 6.80e-01 100.0% 55.3%
3165082 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 8.30e-01 100.0% 92.0%
3337080 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 83.0 7.60e-01 100.0% 76.7%
4216124 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 82.0 8.37e-01 97.8% 100.0%
4157099 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 84.0 8.27e-01 100.0% 95.8%
3191020 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 7.54e-01 100.0% 83.3%
3691772 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 7.79e-01 100.0% 83.6%
4404011 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 7.09e-01 100.0% 65.7%
3903953 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 79.0 7.74e-01 100.0% 88.0%
3641672 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.91 84.0 6.98e-01 100.0% 61.3%
3186054 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 82.0 7.97e-01 100.0% 90.0%
3982977 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.91 83.0 7.50e-01 100.0% 76.7%
4491522 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.49e-01 100.0% 76.7%
3240624 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.70e-01 100.0% 83.6%
4662825 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.24e-01 100.0% 73.8%
3182366 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 6.92e-01 100.0% 65.8%
4277578 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.98e-01 100.0% 92.0%
3964920 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 78.0 7.23e-01 100.0% 75.9%
3349612 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.90 78.0 7.60e-01 100.0% 88.0%
3303205 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 81.0 7.36e-01 100.0% 80.0%
3413357 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.00e-01 100.0% 65.7%
3946658 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 82.0 6.99e-01 100.0% 67.1%
1758716 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 81.0 7.74e-01 100.0% 88.5%
4555777 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.89 77.0 6.64e-01 100.0% 62.9%
3230171 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 81.0 7.88e-01 100.0% 92.0%
3810505 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 80.0 5.34e-01 100.0% 27.9%
3247196 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.89 80.0 7.30e-01 100.0% 76.7%
3320955 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.89 81.0 7.11e-01 100.0% 70.8%
3367888 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.89 79.0 6.86e-01 100.0% 72.9%
4015813 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.89 79.0 7.21e-01 100.0% 78.3%
3456918 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 81.0 6.13e-01 100.0% 46.0%
3711427 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 77.0 6.65e-01 100.0% 63.8%
4149501 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.81e-01 100.0% 92.0%
3698672 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 76.0 5.75e-01 100.0% 41.9%
3964929 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 75.0 7.58e-01 95.7% 95.6%
4128043 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 78.0 7.87e-01 97.8% 100.0%
3925474 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.80e-01 100.0% 92.0%
4492966 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 78.0 7.41e-01 100.0% 83.6%
3217973 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 6.80e-01 100.0% 65.7%
3517460 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 7.46e-01 100.0% 83.6%
3182365 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.88 79.0 7.51e-01 100.0% 86.8%
3598919 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.88 75.0 4.67e-01 100.0% 18.3%
3720958 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 78.0 7.59e-01 100.0% 92.0%
3846469 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 79.0 6.24e-01 100.0% 51.1%
3190118 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 77.0 7.57e-01 100.0% 96.0%
3331840 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 78.0 7.31e-01 100.0% 83.6%
3181142 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 72.0 7.07e-01 93.5% 96.0%
3189252 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 75.0 6.76e-01 100.0% 72.3%
1759182 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 77.0 7.44e-01 100.0% 90.2%
3250125 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 77.0 6.84e-01 100.0% 73.8%
3970704 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.86 76.0 6.77e-01 100.0% 70.8%
2042916 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 75.0 7.13e-01 100.0% 85.2%
3232962 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 76.0 6.95e-01 100.0% 76.7%
3355077 101.15.1.13 alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK 0.85 76.0 7.19e-01 100.0% 85.5%
3604763 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.85 74.0 6.02e-01 100.0% 52.9%
3413453 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 74.0 7.27e-01 100.0% 92.0%
3306283 101.15.1.8 alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.83 72.0 6.47e-01 100.0% 70.8%
3217972 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 71.0 6.59e-01 100.0% 76.7%
3267280 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.80 69.0 6.75e-01 100.0% 94.0%
2644066 101.15.1.7 alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.79 66.0 5.67e-01 100.0% 57.9%
4460243 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.77 61.0 5.82e-01 89.1% 96.4%