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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00119

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00119

Identity

Kingdom:
phage

Quality

90.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 200-267
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00533.34 best BRCT 29.6 9.10e-07 88.2% 76.9%
PF12738.14 PTCB-BRCT 31.4 2.20e-07 86.8% 87.3%
D2 medium residues 4-35
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 48.0 2.74e-01 93.8% 15.5%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 46.0 2.74e-01 93.8% 36.7%
2xcqA02 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.57 41.0 2.55e-01 93.8% 35.4%
3v64C01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 39.0 3.98e-01 96.9% 80.6%
1tzfA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 40.0 2.46e-01 84.4% 39.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710958 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.62 46.0 3.39e-01 84.4% 52.6%
3626314 862.1.1.11 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R 0.57 48.0 2.93e-01 100.0% 60.0%
4945553 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.55 43.0 2.52e-01 84.4% 97.5%
3212403 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.54 41.0 2.57e-01 90.6% 12.5%
5049796 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 3.89e-01 100.0% 58.2%
4651940 7515.1.1.15 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest, Metalloenzyme 0.53 37.0 2.21e-01 84.4% 73.7%
D3 medium residues 107-189
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tt5A05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.83 72.0 7.47e-01 92.8% 100.0%
2i1qA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.79 52.0 5.96e-01 73.5% 91.9%
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.75 50.0 5.83e-01 74.7% 100.0%
6tqoA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.75 51.0 5.87e-01 75.9% 98.3%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.75 53.0 5.83e-01 81.9% 92.5%
2bgwA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.74 53.0 5.60e-01 78.3% 83.8%
3c1yA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.74 53.0 5.94e-01 81.9% 98.4%
1u9lB00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.73 56.0 6.03e-01 88.0% 98.6%
2e8oA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.69 48.0 5.37e-01 79.5% 98.4%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.61 51.0 4.01e-01 92.8% 81.5%
2d3dA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 48.0 4.88e-01 94.0% 88.0%
3cymA03 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.59 46.0 4.53e-01 85.5% 89.8%
2dgzA01 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.59 45.0 4.49e-01 84.3% 80.9%
4xviA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 43.0 3.69e-01 83.1% 46.5%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 50.0 3.88e-01 100.0% 90.8%
1ornA01 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 45.0 4.13e-01 86.7% 72.3%
1wudA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.57 46.0 4.73e-01 88.0% 97.4%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 45.0 4.13e-01 89.2% 92.8%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.56 44.0 4.37e-01 85.5% 84.1%
3un6A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.66e-01 97.6% 65.1%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 48.0 3.86e-01 98.8% 98.2%
2qddA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.89e-01 95.2% 96.9%
2rrdA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.53 44.0 4.20e-01 95.2% 79.2%
3ulkA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 45.0 3.21e-01 100.0% 95.7%
1f6fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 40.0 3.19e-01 85.5% 80.9%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.84e-01 89.2% 86.3%
3safA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.51 44.0 4.18e-01 100.0% 86.0%
7jpxA02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 41.0 3.74e-01 91.6% 79.3%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 37.0 3.33e-01 78.3% 74.6%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 41.0 2.86e-01 94.0% 61.9%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.50 41.0 3.73e-01 96.4% 76.0%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 42.0 3.33e-01 97.6% 92.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4204484 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.85 78.0 5.98e-01 98.8% 46.9%
5059766 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.84 67.0 7.28e-01 86.7% 100.0%
5060034 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.84 61.0 6.51e-01 79.5% 86.3%
3290867 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.84 58.0 6.74e-01 74.7% 100.0%
4529325 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.83 75.0 5.62e-01 96.4% 43.2%
3971169 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.82 72.0 6.31e-01 94.0% 66.7%
4128729 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.82 74.0 5.63e-01 98.8% 45.0%
5059290 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.82 53.0 6.34e-01 71.1% 100.0%
4253823 102.1.1.81 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.82 75.0 5.05e-01 100.0% 29.0%
5059289 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.80 58.0 6.11e-01 80.7% 84.0%
5061085 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.78 54.0 6.20e-01 77.1% 100.0%
5068422 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.78 60.0 5.99e-01 85.5% 80.0%
5067510 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.78 55.0 5.99e-01 78.3% 88.6%
4981590 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 54.0 6.22e-01 80.7% 100.0%
4945133 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 53.0 5.99e-01 78.3% 93.7%
4032497 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.77 59.0 6.39e-01 81.9% 95.7%
5039719 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.77 53.0 6.02e-01 74.7% 98.3%
4199114 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.77 52.0 6.00e-01 78.3% 98.3%
4234483 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.76 53.0 6.12e-01 75.9% 100.0%
3593047 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 56.0 6.28e-01 81.9% 100.0%
5039717 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 56.0 6.02e-01 84.3% 92.9%
5061478 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.75 55.0 5.98e-01 77.1% 91.4%
4149240 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 59.0 6.32e-01 86.7% 98.6%
5081795 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 57.0 6.16e-01 86.7% 95.7%
5045952 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 55.0 5.78e-01 80.7% 87.8%
4940020 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.74 51.0 4.99e-01 78.3% 66.3%
5060570 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 55.0 5.53e-01 81.9% 77.6%
5051996 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 56.0 5.70e-01 85.5% 83.7%
3987996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 56.0 6.02e-01 85.5% 97.1%
5065201 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 54.0 5.97e-01 81.9% 100.0%
None 0.73 53.0 4.98e-01 75.9% 70.0%
5076446 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 52.0 5.44e-01 83.1% 82.7%
3276791 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 50.0 5.67e-01 78.3% 98.3%
4975697 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 54.0 5.78e-01 81.9% 92.9%
4927478 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.72 51.0 5.52e-01 83.1% 88.6%
4946451 102.1.1.182 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 0.72 51.0 5.50e-01 74.7% 90.0%
4672295 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 58.0 5.75e-01 88.0% 84.7%
4052361 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 61.0 6.09e-01 94.0% 91.8%
None 0.71 59.0 5.90e-01 94.0% 88.2%
4949723 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 53.0 5.69e-01 83.1% 95.7%
5044794 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.70 51.0 5.60e-01 81.9% 100.0%
3902412 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.67 50.0 5.09e-01 85.5% 81.2%
4964212 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.67 50.0 5.33e-01 89.2% 95.7%
3969540 7014.1.1.0 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 0.65 45.0 3.92e-01 72.3% 94.6%
5037061 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.63 45.0 3.29e-01 75.9% 53.2%
4277216 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.62 43.0 3.70e-01 72.3% 94.1%
3617028 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.62 47.0 4.79e-01 81.9% 85.0%
4557838 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.59 40.0 3.47e-01 72.3% 77.9%
3959708 608.1.1.0 alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.57 42.0 3.49e-01 79.5% 75.0%
3740048 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.55 46.0 3.73e-01 98.8% 82.2%
3697193 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.54 42.0 3.63e-01 84.3% 67.7%
3172088 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 43.0 3.64e-01 96.4% 87.1%
5011392 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 39.0 3.05e-01 80.7% 88.9%
3916096 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 39.0 3.02e-01 84.3% 87.0%