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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00124
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00124
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 105-155
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.75 | 60.0 | 4.12e-01 | 90.2% | 59.0% |
| 1bqbA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.61 | 53.0 | 3.77e-01 | 100.0% | 41.6% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 41.0 | 3.44e-01 | 72.5% | 83.3% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 42.0 | 2.87e-01 | 82.4% | 30.1% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.78e-01 | 98.0% | 90.2% |
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 45.0 | 4.42e-01 | 94.1% | 100.0% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.66e-01 | 82.4% | 62.7% |
| 2pvuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 46.0 | 3.48e-01 | 100.0% | 88.6% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 44.0 | 3.09e-01 | 98.0% | 40.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 38.0 | 3.72e-01 | 96.1% | 73.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396844 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.71 | 39.0 | 2.53e-01 | 70.6% | 13.3% |
| 3926998 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 51.0 | 4.45e-01 | 100.0% | 53.8% |
| 3403344 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.63 | 49.0 | 4.68e-01 | 86.3% | 85.0% |
| 3215155 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.62 | 54.0 | 3.37e-01 | 100.0% | 50.2% |
| 4126633 | 386.1.1.75 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Rua1_C | 0.62 | 42.0 | 3.88e-01 | 74.5% | 65.3% |
| 4303957 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.60 | 44.0 | 3.04e-01 | 82.4% | 25.2% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.59 | 40.0 | 3.70e-01 | 72.5% | 64.3% |
| 5045429 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 51.0 | 4.19e-01 | 98.0% | 65.3% |
| 3400447 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 49.0 | 3.23e-01 | 94.1% | 52.0% |
| 4627523 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.59 | 41.0 | 3.64e-01 | 74.5% | 61.3% |
| 3273944 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 52.0 | 3.01e-01 | 100.0% | 36.7% |
| 4863926 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.58 | 40.0 | 3.95e-01 | 74.5% | 87.0% |
| 3938261 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.57 | 50.0 | 3.60e-01 | 100.0% | 38.7% |
| 3204926 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.57 | 40.0 | 3.68e-01 | 76.5% | 70.0% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.56 | 45.0 | 3.53e-01 | 94.1% | 40.8% |
| 4983870 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.55 | 44.0 | 3.77e-01 | 96.1% | 87.4% |
| 3582647 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.54 | 44.0 | 3.01e-01 | 92.2% | 74.7% |
| 3941320 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.54 | 43.0 | 3.81e-01 | 88.2% | 62.7% |
| 3618540 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 41.0 | 3.60e-01 | 98.0% | 56.0% |
| 4105328 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.54 | 41.0 | 3.81e-01 | 98.0% | 66.2% |
| 3267765 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 46.0 | 3.65e-01 | 100.0% | 50.0% |
| 4028791 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.53 | 45.0 | 4.45e-01 | 98.0% | 85.5% |
| 3930990 | 386.1.1.251 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 | 0.53 | 37.0 | 3.42e-01 | 92.2% | 54.8% |
| 3165049 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.53 | 39.0 | 3.58e-01 | 98.0% | 61.5% |
| 4351646 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.52 | 42.0 | 2.95e-01 | 94.1% | 30.8% |
| 3506997 | 206.1.2.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK | 0.51 | 46.0 | 2.88e-01 | 100.0% | 72.5% |
| 4026211 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.51 | 36.0 | 3.62e-01 | 76.5% | 100.0% |
D2
high
residues 165-288
Domain cluster:
rep: IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031726__D151-252
D3
medium
residues 3-87
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n98A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.56 | 41.0 | 2.60e-01 | 76.5% | 24.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.61 | 42.0 | 3.24e-01 | 71.8% | 78.9% |
| 3033301 | 5077.1.1.1 ↗ | extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chloroa_b-bind | 0.58 | 44.0 | 3.19e-01 | 78.8% | 33.8% |
| 4646609 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.57 | 43.0 | 3.53e-01 | 78.8% | 81.4% |
| 3723402 | 3352.1.1.4 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Alg6_Alg8 | 0.53 | 46.0 | 2.80e-01 | 95.3% | 67.4% |