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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00143
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00143
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-104
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 46.0 | 4.81e-01 | 86.7% | 82.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.63 | 37.0 | 4.45e-01 | 80.7% | 96.0% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 38.0 | 4.39e-01 | 77.1% | 94.5% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.59 | 27.0 | 3.35e-01 | 75.9% | 66.0% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 37.0 | 3.78e-01 | 85.5% | 63.1% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 34.0 | 3.95e-01 | 75.9% | 95.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 35.0 | 3.43e-01 | 75.9% | 54.3% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.56 | 43.0 | 3.69e-01 | 84.3% | 80.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 34.0 | 3.37e-01 | 75.9% | 55.4% |
| 2ixdA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.55 | 44.0 | 3.26e-01 | 90.4% | 61.2% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 32.0 | 3.15e-01 | 100.0% | 55.7% |
| 4d8mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 37.0 | 3.01e-01 | 75.9% | 36.5% |
| 2j5vB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 42.0 | 3.14e-01 | 90.4% | 92.6% |
| 7syvx01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 42.0 | 3.61e-01 | 96.4% | 54.0% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.51 | 30.0 | 3.43e-01 | 73.5% | 81.4% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.33e-01 | 85.5% | 57.7% |
| 2nn6C00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 37.0 | 2.71e-01 | 80.7% | 50.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.66 | 42.0 | 4.95e-01 | 74.7% | 100.0% |
| 5030993 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 46.0 | 4.67e-01 | 88.0% | 78.8% |
| 4033923 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 55.0 | 5.08e-01 | 100.0% | 75.2% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 45.0 | 4.76e-01 | 88.0% | 85.3% |
| 5035944 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 39.0 | 4.40e-01 | 77.1% | 91.7% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.57 | 46.0 | 4.85e-01 | 97.6% | 97.3% |
| 3781930 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.56 | 39.0 | 4.28e-01 | 77.1% | 92.3% |
| 3725441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 37.0 | 4.14e-01 | 75.9% | 96.7% |
| 3217778 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.54 | 38.0 | 3.52e-01 | 75.9% | 56.4% |
| 3469808 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 36.0 | 4.05e-01 | 75.9% | 98.3% |
| 4948263 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 44.0 | 3.45e-01 | 100.0% | 60.2% |
| 3937161 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 38.0 | 3.72e-01 | 80.7% | 84.4% |
D2
high
residues 206-251
Domain cluster:
rep: IMGVR_UViG_3300028628_000438-3300028628-Ga0302249_10078585__D53-99
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w2lA00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.66 | 45.0 | 3.60e-01 | 73.9% | 79.4% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 50.0 | 4.70e-01 | 100.0% | 67.6% |
| 4wz2C00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 40.0 | 3.45e-01 | 100.0% | 54.1% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 37.0 | 2.21e-01 | 80.4% | 9.2% |
| 4lesA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.02e-01 | 100.0% | 94.4% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.14e-01 | 100.0% | 84.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.65 | 50.0 | 4.68e-01 | 100.0% | 66.7% |
| 5028609 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.59 | 39.0 | 3.86e-01 | 100.0% | 62.0% |
| 5064213 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.57 | 47.0 | 2.90e-01 | 100.0% | 74.9% |
| 5082591 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.54 | 46.0 | 2.78e-01 | 100.0% | 72.7% |
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.52 | 41.0 | 3.17e-01 | 93.5% | 43.5% |
| 3655044 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.51 | 40.0 | 3.69e-01 | 100.0% | 66.7% |
| 3831781 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 38.0 | 3.18e-01 | 100.0% | 46.3% |