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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00159
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00159
Identity
- Kingdom:
- phage
Quality
55.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-120
D2
high
residues 131-202
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.79 | 54.0 | 5.08e-01 | 70.8% | 60.0% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 57.0 | 4.20e-01 | 81.9% | 35.5% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 4.65e-01 | 76.4% | 73.3% |
| 4al0A00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.71 | 49.0 | 3.85e-01 | 70.8% | 35.6% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.71 | 48.0 | 3.90e-01 | 70.8% | 41.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 48.0 | 5.09e-01 | 70.8% | 90.3% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.70 | 50.0 | 3.40e-01 | 90.3% | 20.8% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 50.0 | 5.03e-01 | 77.8% | 84.9% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.67 | 56.0 | 4.56e-01 | 88.9% | 51.6% |
| 4qndA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.67 | 54.0 | 4.92e-01 | 88.9% | 73.2% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.66 | 55.0 | 4.78e-01 | 94.4% | 75.2% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 49.0 | 4.80e-01 | 81.9% | 79.5% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.65 | 44.0 | 4.03e-01 | 70.8% | 53.1% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 48.0 | 3.97e-01 | 81.9% | 64.4% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 53.0 | 4.97e-01 | 95.8% | 79.8% |
| 3fnrA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.63 | 51.0 | 4.15e-01 | 91.7% | 86.2% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 47.0 | 4.00e-01 | 83.3% | 56.3% |
| 1rc2A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.62 | 53.0 | 3.79e-01 | 100.0% | 86.6% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.61 | 54.0 | 4.40e-01 | 100.0% | 58.2% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 47.0 | 4.33e-01 | 88.9% | 100.0% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.60 | 52.0 | 4.43e-01 | 100.0% | 79.3% |
| 4jvsA01 | 1.20.120.1700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 47.0 | 3.96e-01 | 87.5% | 61.9% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.58 | 41.0 | 4.22e-01 | 79.2% | 77.9% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.56 | 49.0 | 3.99e-01 | 97.2% | 59.4% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.55 | 38.0 | 3.93e-01 | 72.2% | 94.1% |
| 1iqcA02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 47.0 | 3.77e-01 | 100.0% | 89.0% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.54 | 42.0 | 3.45e-01 | 87.5% | 97.3% |
| 3pntA01 | 1.10.10.1660 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nicotine adenine dinucleotide glycohydrolase, helical linker domain | 0.54 | 36.0 | 3.64e-01 | 73.6% | 66.7% |
| 2lsgA00 | 1.20.58.1280 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain | 0.54 | 39.0 | 3.65e-01 | 83.3% | 59.8% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.52 | 32.0 | 3.45e-01 | 93.1% | 73.3% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 38.0 | 3.34e-01 | 77.8% | 62.0% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.51 | 38.0 | 3.20e-01 | 79.2% | 62.1% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 40.0 | 3.30e-01 | 88.9% | 62.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.72 | 65.0 | 5.55e-01 | 100.0% | 65.2% |
| 3472426 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.72 | 57.0 | 4.94e-01 | 84.7% | 61.8% |
| 3221764 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.72 | 55.0 | 5.32e-01 | 81.9% | 78.8% |
| 3706387 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.72 | 56.0 | 4.92e-01 | 83.3% | 63.8% |
| 5034342 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.72 | 59.0 | 5.74e-01 | 88.9% | 85.0% |
| 3381499 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.70 | 48.0 | 2.95e-01 | 70.8% | 12.8% |
| 3939532 | 6155.1.1.7 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › CLPTM1 | 0.70 | 57.0 | 4.45e-01 | 88.9% | 43.9% |
| 4929003 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.70 | 58.0 | 5.36e-01 | 88.9% | 77.8% |
| 3256571 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.70 | 56.0 | 5.13e-01 | 87.5% | 74.7% |
| 3703277 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.70 | 49.0 | 5.05e-01 | 75.0% | 82.9% |
| 3262601 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.68 | 55.0 | 5.27e-01 | 88.9% | 84.7% |
| 3810721 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.68 | 55.0 | 5.04e-01 | 88.9% | 74.7% |
| 3202941 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.68 | 55.0 | 4.71e-01 | 88.9% | 61.7% |
| 3357085 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.67 | 53.0 | 5.10e-01 | 87.5% | 83.5% |
| 3309682 | 159.1.2.2 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG | 0.67 | 58.0 | 5.06e-01 | 95.8% | 74.5% |
| 3189488 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.67 | 52.0 | 4.56e-01 | 84.7% | 66.4% |
| 4660991 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.67 | 47.0 | 3.29e-01 | 75.0% | 46.3% |
| 3233929 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.66 | 57.0 | 4.07e-01 | 100.0% | 40.0% |
| 3363819 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.65 | 54.0 | 4.63e-01 | 95.8% | 68.0% |
| 3927756 | 3817.1.1.1 ↗ | alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 | 0.65 | 46.0 | 3.94e-01 | 75.0% | 49.2% |
| 4344324 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.65 | 56.0 | 3.93e-01 | 97.2% | 45.5% |
| 3228203 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.64 | 55.0 | 3.95e-01 | 98.6% | 36.0% |
| 4070260 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.64 | 46.0 | 3.60e-01 | 76.4% | 37.4% |
| 3809829 | 109.4.1.480 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TMEM214 | 0.64 | 49.0 | 3.05e-01 | 87.5% | 14.2% |
| 3519453 | 3922.1.1.216 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › OATP | 0.63 | 56.0 | 4.53e-01 | 98.6% | 56.3% |
| 5060383 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 48.0 | 4.73e-01 | 81.9% | 86.7% |
| 3943266 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.63 | 53.0 | 4.05e-01 | 98.6% | 39.5% |
| 3039253 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.63 | 55.0 | 4.10e-01 | 100.0% | 40.7% |
| 3692194 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.62 | 49.0 | 4.83e-01 | 88.9% | 86.3% |
| 3287952 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.61 | 51.0 | 4.41e-01 | 100.0% | 67.2% |
| 4014515 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 45.0 | 4.19e-01 | 81.9% | 68.4% |
| 5037258 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 53.0 | 3.95e-01 | 100.0% | 96.1% |
| 4049847 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.59 | 50.0 | 4.29e-01 | 100.0% | 68.0% |
| 4978840 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.58 | 42.0 | 3.21e-01 | 76.4% | 34.9% |
| 3783731 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.58 | 44.0 | 2.78e-01 | 87.5% | 14.0% |
| 4958879 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.57 | 52.0 | 4.05e-01 | 100.0% | 48.7% |
| 5060868 | 140.1.1.9 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3 | 0.57 | 52.0 | 3.90e-01 | 100.0% | 47.6% |
| 3195747 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.56 | 46.0 | 4.67e-01 | 90.3% | 91.4% |
| 5041443 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.56 | 43.0 | 2.93e-01 | 86.1% | 53.1% |
| 3709588 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.54 | 48.0 | 4.67e-01 | 97.2% | 87.5% |
| 3592841 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 48.0 | 4.86e-01 | 98.6% | 100.0% |
| 3897328 | 2003.1.5.111 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22 | 0.50 | 41.0 | 2.67e-01 | 91.7% | 89.7% |