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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00213

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00213

Identity

Kingdom:
phage

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bwvA02 1.10.40.40 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Deoxyribonucleotidase; domain 2 0.69 49.0 5.38e-01 100.0% 100.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 55.0 5.26e-01 100.0% 86.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 55.0 4.92e-01 100.0% 90.5%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 55.0 5.30e-01 100.0% 89.1%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.66 47.0 4.85e-01 75.5% 92.2%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.65 53.0 4.80e-01 100.0% 66.2%
1rdfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 4.78e-01 100.0% 92.3%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 52.0 5.01e-01 100.0% 82.8%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 51.0 4.71e-01 100.0% 89.3%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.62 46.0 4.19e-01 81.1% 90.4%
3bg5B07 1.10.10.2790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 42.0 4.41e-01 71.7% 82.6%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.61 44.0 4.19e-01 98.1% 65.6%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 48.0 4.42e-01 94.3% 84.2%
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.61 43.0 3.22e-01 92.5% 30.5%
3tw6B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 43.0 2.49e-01 79.2% 54.5%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.63e-01 100.0% 95.3%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.58 41.0 2.85e-01 75.5% 50.5%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 3.36e-01 96.2% 78.7%
2af6A02 6.10.140.450 Special › Helix non-globular › Helix Hairpins › 0.54 42.0 4.06e-01 90.6% 96.8%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 3.56e-01 81.1% 93.3%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.53 37.0 3.13e-01 73.6% 87.6%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.63e-01 92.5% 75.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 50.0 4.39e-01 73.6% 47.5%
3871036 103.1.1.27 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 0.59 47.0 4.65e-01 96.2% 91.7%
9874 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.59 48.0 3.30e-01 100.0% 32.1%
3711217 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.57 42.0 3.98e-01 81.1% 76.9%
3596754 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.57 41.0 3.91e-01 81.1% 78.5%
4966372 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 48.0 3.04e-01 100.0% 76.5%
3239541 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.55 37.0 2.89e-01 71.7% 41.6%
4042007 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 39.0 3.13e-01 100.0% 38.2%
3436979 109.4.1.1401 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RPAP1 0.52 40.0 2.70e-01 90.6% 29.4%
3708809 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.79e-01 88.7% 78.5%
3928667 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.52 45.0 3.69e-01 96.2% 71.6%
4021435 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.51 39.0 2.86e-01 84.9% 32.3%