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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00255

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00255

Identity

Kingdom:
phage

Quality

86.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.70 51.0 4.99e-01 88.9% 71.4%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.69 49.0 4.05e-01 98.6% 41.7%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.66 48.0 4.41e-01 100.0% 58.2%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 49.0 3.72e-01 100.0% 33.7%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 58.0 4.01e-01 100.0% 31.2%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 52.0 4.34e-01 100.0% 51.6%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 48.0 3.07e-01 81.9% 20.3%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.62 42.0 4.10e-01 72.2% 64.1%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.24e-01 90.3% 54.1%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 44.0 3.24e-01 75.0% 32.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 4.13e-01 90.3% 65.1%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.60 43.0 4.08e-01 87.5% 62.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 47.0 4.18e-01 88.9% 84.9%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.58 44.0 4.08e-01 91.7% 63.2%
3t5sA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.58 36.0 3.25e-01 100.0% 45.4%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 39.0 3.44e-01 72.2% 73.4%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.75e-01 87.5% 15.8%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.57 40.0 2.88e-01 75.0% 65.6%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.56e-01 84.7% 70.8%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 42.0 2.71e-01 81.9% 20.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 41.0 4.00e-01 94.4% 70.9%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 44.0 3.38e-01 93.1% 58.1%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.54 43.0 2.88e-01 88.9% 73.2%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 41.0 3.49e-01 84.7% 88.9%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.24e-01 88.9% 43.4%
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.52 46.0 3.40e-01 98.6% 90.1%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 2.86e-01 80.6% 96.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 48.0 4.55e-01 100.0% 84.9%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.60e-01 76.4% 26.3%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.27e-01 88.9% 64.8%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 46.0 3.76e-01 100.0% 77.4%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 3.52e-01 94.4% 79.0%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 41.0 3.62e-01 90.3% 87.6%
2d4oA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.49e-01 90.3% 63.6%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 2.84e-01 90.3% 68.7%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.92e-01 83.3% 86.5%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.73e-01 87.5% 76.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3955435 2484.1.1.216 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF7159 0.71 55.0 4.83e-01 100.0% 57.1%
5011728 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.69 50.0 4.58e-01 100.0% 57.9%
3698253 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.67 49.0 2.92e-01 76.4% 16.6%
3605586 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.67 48.0 3.02e-01 87.5% 13.9%
4016434 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.67 47.0 2.95e-01 73.6% 15.3%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 49.0 4.46e-01 80.6% 60.0%
3991459 220.1.1.60 beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.65 52.0 3.76e-01 100.0% 30.5%
5024527 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.65 52.0 4.77e-01 88.9% 71.6%
3243872 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 56.0 3.84e-01 100.0% 28.9%
5005225 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.63 49.0 4.67e-01 100.0% 71.1%
4494590 3223.1.1.1 beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.63 53.0 3.14e-01 94.4% 50.1%
2623870 2484.1.1.44 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.63 48.0 3.73e-01 98.6% 38.9%
3707878 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.63 43.0 2.93e-01 86.1% 18.6%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.62 47.0 3.79e-01 90.3% 40.7%
5034195 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 38.0 4.29e-01 70.8% 80.0%
3610756 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 48.0 4.24e-01 83.3% 58.1%
3710324 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 47.0 4.16e-01 83.3% 58.2%
3702613 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 41.0 4.74e-01 70.8% 100.0%
None 0.60 45.0 2.71e-01 80.6% 29.9%
4444614 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 47.0 4.60e-01 90.3% 77.5%
3872511 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.59 46.0 3.74e-01 100.0% 43.6%
4424238 220.1.1.127 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.59 43.0 3.48e-01 90.3% 37.4%
4987637 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 44.0 2.66e-01 80.6% 29.0%
3327473 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.58 50.0 4.39e-01 100.0% 66.7%
None 0.58 46.0 2.96e-01 88.9% 22.7%
3512466 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 4.13e-01 100.0% 56.0%
3201410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.65e-01 93.1% 43.4%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.57 42.0 3.47e-01 88.9% 43.1%
3215044 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 46.0 2.90e-01 88.9% 31.2%
3828493 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.53e-01 100.0% 41.2%
None 0.57 48.0 3.72e-01 100.0% 41.2%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.57 45.0 3.85e-01 100.0% 52.0%
3169468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.71e-01 84.7% 16.5%
3235681 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.57 42.0 2.61e-01 86.1% 13.1%
3994778 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.35e-01 90.3% 40.3%
3514575 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 4.22e-01 100.0% 65.7%
3582577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.78e-01 90.3% 53.1%
3281635 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.56 45.0 3.90e-01 87.5% 88.2%
3709448 10.37.1.0 beta sandwiches › jelly-roll › TerD › TerD 0.56 46.0 3.30e-01 91.7% 86.4%
3494392 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 43.0 2.80e-01 87.5% 72.7%
3400623 284.1.3.13 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › PF30019 0.55 38.0 3.85e-01 95.8% 72.0%
3502587 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.55 46.0 4.17e-01 100.0% 67.6%
3545281 220.1.1.60 beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.54 44.0 3.51e-01 100.0% 41.2%
3258452 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 45.0 3.82e-01 93.1% 61.7%
3825504 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.54 44.0 4.11e-01 91.7% 77.8%
3285297 213.1.1.36 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_17 0.54 44.0 3.38e-01 88.9% 59.4%
4025081 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.23e-01 100.0% 39.3%
4018401 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.53 42.0 3.57e-01 90.3% 56.9%
3529797 220.1.1.68 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.53 42.0 3.28e-01 90.3% 37.6%
3259407 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 43.0 4.09e-01 90.3% 77.6%
3845291 220.1.1.119 beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.53 43.0 3.13e-01 97.2% 62.1%
3988052 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.52 42.0 3.58e-01 90.3% 81.5%
3295157 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 46.0 3.11e-01 100.0% 75.7%
3898197 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.52 39.0 3.27e-01 100.0% 42.8%
3209497 206.1.3.18 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.52 46.0 2.96e-01 98.6% 32.5%
3254360 2004.1.1.294 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6 0.51 45.0 2.97e-01 100.0% 55.2%
4224561 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.51 44.0 3.03e-01 100.0% 64.9%
None 0.51 42.0 3.27e-01 91.7% 83.5%
3212650 213.1.1.37 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_18 0.51 40.0 3.08e-01 87.5% 48.6%
3212546 213.1.1.49 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1248 0.51 40.0 3.14e-01 87.5% 51.5%
4945668 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.51 36.0 2.93e-01 75.0% 97.9%
4641929 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 40.0 3.48e-01 100.0% 52.8%
5035858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.43e-01 90.3% 94.1%
3514006 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.51 43.0 2.94e-01 100.0% 60.7%