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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00261
Bact-VirBML_coassembly_scaffold_37_prodigal-single.1__X__X__00261
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-185
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 51.3 | 1.90e-13 | 61.2% | 66.5% |
| PF02834.23 | LigT_PEase | 23.4 | 7.80e-05 | 42.1% | 80.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jh6A00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.81 | 72.0 | 7.18e-01 | 92.7% | 95.6% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 67.0 | 6.61e-01 | 93.3% | 98.9% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.75 | 68.0 | 6.73e-01 | 94.4% | 98.4% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.75 | 65.0 | 6.77e-01 | 92.7% | 99.4% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.75 | 66.0 | 6.77e-01 | 93.3% | 98.2% |
| 1b4bA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.69 | 22.0 | 3.49e-01 | 75.3% | 70.4% |
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.65 | 55.0 | 5.19e-01 | 87.6% | 99.0% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 26.0 | 3.47e-01 | 75.3% | 68.7% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 26.0 | 3.56e-01 | 77.0% | 74.2% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.58 | 20.0 | 2.95e-01 | 76.4% | 65.8% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 24.0 | 3.21e-01 | 78.7% | 75.8% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 23.0 | 3.02e-01 | 76.4% | 72.6% |
| 1u5kA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 22.0 | 2.98e-01 | 86.0% | 76.8% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3821993 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.84 | 74.0 | 6.43e-01 | 92.1% | 77.9% |
| 3680289 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.84 | 74.0 | 7.12e-01 | 91.6% | 99.5% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 73.0 | 7.40e-01 | 91.6% | 99.4% |
| 3962197 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 71.0 | 7.34e-01 | 91.0% | 98.8% |
| 3338135 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 73.0 | 7.29e-01 | 93.3% | 96.7% |
| 3955687 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 70.0 | 7.26e-01 | 89.3% | 98.8% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.81 | 75.0 | 6.94e-01 | 97.2% | 98.2% |
| 276 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.81 | 72.0 | 7.18e-01 | 92.7% | 95.6% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 72.0 | 6.88e-01 | 95.5% | 94.1% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 69.0 | 6.83e-01 | 92.7% | 98.4% |
| 3744563 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.78 | 68.0 | 6.79e-01 | 91.6% | 98.3% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 68.0 | 6.76e-01 | 92.1% | 98.4% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 68.0 | 6.79e-01 | 92.1% | 98.4% |
| 4932664 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 69.0 | 6.85e-01 | 93.3% | 98.4% |
| 4972305 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 68.0 | 6.83e-01 | 92.7% | 98.9% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 68.0 | 6.84e-01 | 93.3% | 100.0% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 68.0 | 6.80e-01 | 92.7% | 98.9% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 67.0 | 6.69e-01 | 92.1% | 100.0% |
| None | — | 0.76 | 66.0 | 6.72e-01 | 91.0% | 98.9% | |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 65.0 | 6.88e-01 | 90.4% | 100.0% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 67.0 | 6.65e-01 | 92.7% | 98.9% |
| 5028063 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 67.0 | 6.78e-01 | 92.1% | 97.1% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 66.0 | 6.59e-01 | 92.7% | 97.8% |
| None | — | 0.76 | 67.0 | 6.91e-01 | 93.3% | 98.8% | |
| 4937535 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 66.0 | 6.67e-01 | 91.0% | 98.9% |
| None | — | 0.76 | 67.0 | 6.61e-01 | 93.3% | 98.9% | |
| None | — | 0.76 | 67.0 | 6.68e-01 | 93.3% | 98.9% | |
| None | — | 0.76 | 65.0 | 6.51e-01 | 91.6% | 97.8% | |
| 4046553 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 67.0 | 6.92e-01 | 94.4% | 98.8% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 66.0 | 6.66e-01 | 92.7% | 98.3% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 66.0 | 6.72e-01 | 93.3% | 99.4% |
| 4031839 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 66.0 | 6.78e-01 | 92.7% | 98.8% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 66.0 | 6.48e-01 | 93.3% | 96.8% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 66.0 | 6.59e-01 | 93.3% | 100.0% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 65.0 | 6.46e-01 | 93.3% | 97.9% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.74 | 65.0 | 6.51e-01 | 93.3% | 97.8% |
| 5063905 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.74 | 65.0 | 6.73e-01 | 92.7% | 98.8% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.74 | 65.0 | 6.52e-01 | 92.7% | 98.9% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.74 | 64.0 | 6.39e-01 | 92.7% | 97.8% |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.74 | 64.0 | 6.48e-01 | 91.6% | 98.9% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.73 | 64.0 | 6.41e-01 | 92.1% | 99.4% |
| 4991838 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 54.0 | 6.16e-01 | 74.7% | 100.0% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 64.0 | 6.33e-01 | 92.1% | 98.9% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.73 | 64.0 | 6.46e-01 | 93.3% | 98.3% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 67.0 | 6.60e-01 | 97.8% | 100.0% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.69 | 60.0 | 6.22e-01 | 94.4% | 98.8% |
| 4046343 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.63 | 26.0 | 3.58e-01 | 83.1% | 74.4% |
| 4982133 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.62 | 22.0 | 3.24e-01 | 75.3% | 68.8% |
| 5031820 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 37.0 | 4.35e-01 | 87.1% | 97.5% |
| 4618975 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.55 | 27.0 | 3.19e-01 | 77.0% | 64.8% |
| 4642580 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 24.0 | 2.95e-01 | 84.8% | 62.9% |
| 3602503 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.52 | 35.0 | 4.05e-01 | 87.1% | 98.3% |
| 4981103 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 35.0 | 4.05e-01 | 87.1% | 96.0% |
| 5034364 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 34.0 | 4.02e-01 | 87.6% | 96.0% |
| 4680169 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 24.0 | 2.93e-01 | 83.1% | 66.7% |
| 3990098 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 23.0 | 2.77e-01 | 84.3% | 60.0% |
| 4032678 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 23.0 | 2.87e-01 | 84.8% | 67.0% |
| 5052337 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.51 | 31.0 | 3.44e-01 | 77.5% | 75.7% |