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BML_coassembly_scaffold_37_prodigal-single.1__X__X__00290

Bact-Vir

BML_coassembly_scaffold_37_prodigal-single.1__X__X__00290

Identity

Kingdom:
phage

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-50
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dd5A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 48.0 4.08e-01 82.6% 86.7%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.62 47.0 3.98e-01 82.6% 82.7%
3zi1A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 45.0 3.37e-01 100.0% 29.5%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 41.0 3.90e-01 100.0% 55.9%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.60 41.0 3.03e-01 71.7% 41.0%
1lfwA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 45.0 2.79e-01 82.6% 36.1%
7zxkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.31e-01 71.7% 63.4%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 36.0 3.50e-01 71.7% 51.0%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 44.0 3.42e-01 100.0% 32.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 41.0 2.48e-01 76.1% 10.1%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.59 42.0 2.93e-01 78.3% 34.2%
1z2lA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 44.0 2.71e-01 82.6% 70.3%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 44.0 3.33e-01 95.7% 34.9%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.56 47.0 4.11e-01 100.0% 71.4%
3khxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 44.0 2.87e-01 89.1% 56.3%
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 42.0 3.39e-01 91.3% 39.2%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.14e-01 89.1% 89.5%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 45.0 2.90e-01 95.7% 47.3%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 44.0 3.34e-01 97.8% 53.0%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.97e-01 91.3% 77.6%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.55 41.0 2.78e-01 93.5% 18.7%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 42.0 3.41e-01 84.8% 60.6%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.54 42.0 3.30e-01 97.8% 37.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 39.0 3.65e-01 89.1% 60.7%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.54 39.0 3.16e-01 87.0% 82.1%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 3.15e-01 100.0% 42.1%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 45.0 2.86e-01 100.0% 17.5%
4ncdA02 2.60.40.3970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.60e-01 95.7% 94.3%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 41.0 3.27e-01 97.8% 65.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.72e-01 91.3% 58.5%
3cq4A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.23e-01 93.5% 46.9%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.32e-01 100.0% 69.0%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 38.0 3.51e-01 100.0% 58.0%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 3.19e-01 93.5% 46.8%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 44.0 3.07e-01 100.0% 62.9%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 44.0 3.51e-01 100.0% 52.0%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 41.0 2.54e-01 84.8% 90.7%
4wbtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.12e-01 100.0% 63.2%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.52 42.0 3.02e-01 100.0% 70.6%
2wyrA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 43.0 2.77e-01 97.8% 43.3%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.44e-01 100.0% 47.8%
5xu6C01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.51 37.0 2.98e-01 87.0% 36.1%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.38e-01 93.5% 72.8%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 38.0 3.02e-01 95.7% 50.0%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 42.0 2.70e-01 100.0% 75.7%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 2.66e-01 82.6% 88.7%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 41.0 3.00e-01 100.0% 84.8%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.50 43.0 3.65e-01 100.0% 97.5%
3dmqA07 3.30.360.80 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.50 39.0 3.41e-01 89.1% 83.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012889 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.62 52.0 4.07e-01 97.8% 51.4%
4887391 4042.1.1.1 a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 0.61 43.0 3.16e-01 91.3% 26.3%
3708545 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.61 46.0 3.92e-01 100.0% 48.8%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.01e-01 100.0% 50.6%
4242808 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.59 46.0 3.51e-01 93.5% 35.0%
3705072 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 46.0 3.65e-01 100.0% 40.9%
4439346 3509.1.1.0 a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain 0.57 43.0 2.37e-01 82.6% 27.6%
1397433 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 41.0 3.37e-01 82.6% 58.6%
5074972 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 44.0 2.82e-01 89.1% 44.5%
3979409 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.56 43.0 3.19e-01 91.3% 30.8%
2410067 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 42.0 3.91e-01 97.8% 65.6%
3396803 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.55 42.0 2.39e-01 87.0% 42.6%
3828854 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 45.0 3.36e-01 100.0% 49.6%
223793 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.55 41.0 3.08e-01 93.5% 28.8%
5043699 3509.1.1.0 a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain 0.55 41.0 2.97e-01 100.0% 24.7%
3642252 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 45.0 3.54e-01 100.0% 50.9%
3277423 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.54 39.0 2.84e-01 82.6% 63.3%
3660920 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.54 46.0 3.39e-01 100.0% 39.3%
3510760 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 38.0 2.40e-01 76.1% 11.4%
3267720 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 37.0 3.06e-01 76.1% 37.8%
3632125 3012.1.1.8 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Ned1_M 0.54 43.0 3.53e-01 95.7% 80.0%
3992359 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 38.0 2.97e-01 76.1% 58.0%
3433086 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 46.0 3.70e-01 100.0% 58.9%
3223859 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 44.0 3.95e-01 100.0% 70.0%
3250567 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.53 39.0 2.71e-01 82.6% 60.6%
3789061 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 43.0 3.62e-01 91.3% 82.5%
1214760 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 41.0 3.89e-01 100.0% 71.9%
3268843 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.53 39.0 2.70e-01 82.6% 62.9%
3471348 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.53 41.0 2.52e-01 84.8% 93.0%
4359531 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 39.0 3.37e-01 91.3% 48.8%
3829548 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 45.0 3.30e-01 100.0% 42.3%
5006395 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 42.0 3.57e-01 95.7% 78.6%
3963015 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.52 41.0 3.11e-01 100.0% 83.6%
3958056 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 44.0 3.24e-01 93.5% 50.0%
5074217 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 44.0 2.95e-01 97.8% 24.9%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.47e-01 100.0% 54.7%
73522 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 43.0 3.40e-01 100.0% 48.6%
3735669 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 42.0 3.42e-01 95.7% 58.8%
5075779 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 41.0 3.45e-01 89.1% 80.0%
3579622 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 45.0 3.40e-01 100.0% 45.5%
3425671 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 43.0 3.37e-01 95.7% 60.0%
3962507 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 42.0 3.45e-01 93.5% 75.3%
3252018 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.51 40.0 2.77e-01 91.3% 34.7%
3432354 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 41.0 3.24e-01 93.5% 61.0%
3283415 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.50 40.0 3.78e-01 93.5% 71.7%
3516806 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.50 41.0 2.59e-01 95.7% 20.4%