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BML_coassembly_scaffold_41_prodigal-single.1__X__X__00006
Bact-VirBML_coassembly_scaffold_41_prodigal-single.1__X__X__00006
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-149
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09694.17 best | Gcw_chp | 120.2 | 1.90e-34 | 100.0% | 54.8% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.80 | 62.0 | 5.58e-01 | 100.0% | 60.6% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.71 | 66.0 | 4.90e-01 | 100.0% | 68.6% |
| 2f1cX00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.70 | 65.0 | 5.09e-01 | 100.0% | 70.2% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.69 | 65.0 | 5.11e-01 | 100.0% | 58.3% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.69 | 64.0 | 4.56e-01 | 100.0% | 40.5% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.68 | 60.0 | 4.45e-01 | 100.0% | 38.2% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.68 | 63.0 | 4.95e-01 | 100.0% | 64.0% |
| 1lshA04 | 2.20.80.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 | 0.66 | 51.0 | 4.07e-01 | 81.0% | 85.3% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.66 | 60.0 | 4.38e-01 | 100.0% | 53.8% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.65 | 58.0 | 4.06e-01 | 100.0% | 56.3% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.64 | 58.0 | 4.12e-01 | 100.0% | 64.0% |
| 7btxA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.62 | 56.0 | 4.12e-01 | 100.0% | 52.1% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.62 | 54.0 | 5.33e-01 | 92.1% | 95.4% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.61 | 56.0 | 3.95e-01 | 100.0% | 64.5% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 50.0 | 4.15e-01 | 100.0% | 49.1% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.61 | 47.0 | 4.15e-01 | 83.3% | 82.4% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 55.0 | 3.90e-01 | 100.0% | 59.4% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 53.0 | 4.99e-01 | 97.6% | 89.0% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.58 | 52.0 | 3.65e-01 | 100.0% | 55.0% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 46.0 | 3.55e-01 | 83.3% | 95.9% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 48.0 | 4.77e-01 | 100.0% | 87.4% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 49.0 | 3.20e-01 | 92.9% | 77.4% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 49.0 | 4.70e-01 | 96.8% | 86.4% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 45.0 | 4.29e-01 | 84.9% | 92.3% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 48.0 | 3.26e-01 | 96.8% | 92.5% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 47.0 | 4.51e-01 | 97.6% | 87.8% |
| 3ua3A03 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.52 | 39.0 | 3.37e-01 | 79.4% | 99.0% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 46.0 | 4.33e-01 | 96.0% | 88.5% |
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 44.0 | 3.98e-01 | 92.1% | 71.0% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 45.0 | 3.23e-01 | 100.0% | 93.1% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 46.0 | 4.29e-01 | 100.0% | 79.2% |
| 7dd9A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.50 | 44.0 | 3.58e-01 | 99.2% | 92.2% |
| 1c8uA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 39.0 | 3.65e-01 | 81.7% | 100.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387368 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.73 | 68.0 | 5.25e-01 | 100.0% | 59.1% |
| 3941832 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.71 | 66.0 | 4.60e-01 | 100.0% | 55.3% |
| 3975988 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.71 | 66.0 | 5.11e-01 | 100.0% | 56.9% |
| 4419134 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.71 | 66.0 | 4.93e-01 | 100.0% | 62.8% |
| 1568816 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.70 | 66.0 | 5.04e-01 | 100.0% | 55.6% |
| 3351533 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.70 | 57.0 | 4.25e-01 | 100.0% | 34.9% |
| 4546669 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.69 | 65.0 | 4.47e-01 | 100.0% | 54.0% |
| 3574367 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.69 | 64.0 | 4.62e-01 | 100.0% | 40.0% |
| 3839997 | 5084.5.4.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X | 0.69 | 64.0 | 4.38e-01 | 100.0% | 90.6% |
| 1312446 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.68 | 60.0 | 4.45e-01 | 100.0% | 38.2% |
| 3781449 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.67 | 62.0 | 4.47e-01 | 100.0% | 42.6% |
| 3965708 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.67 | 62.0 | 4.98e-01 | 100.0% | 66.3% |
| 3255874 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.67 | 56.0 | 4.83e-01 | 100.0% | 57.9% |
| 3978947 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.66 | 60.0 | 4.26e-01 | 100.0% | 55.9% |
| 4219386 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.65 | 59.0 | 4.25e-01 | 100.0% | 68.2% |
| 4533056 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.65 | 59.0 | 4.11e-01 | 100.0% | 47.5% |
| 3526427 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.64 | 60.0 | 4.29e-01 | 100.0% | 45.3% |
| 4522601 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.64 | 58.0 | 4.19e-01 | 100.0% | 53.6% |
| 4008277 | 5084.5.1.62 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 | 0.64 | 59.0 | 4.34e-01 | 100.0% | 63.4% |
| 4823574 | 4030.1.1.1 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B | 0.62 | 55.0 | 5.12e-01 | 97.6% | 87.2% |
| 3593584 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.61 | 56.0 | 4.33e-01 | 100.0% | 50.9% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.60 | 54.0 | 4.99e-01 | 97.6% | 83.1% |
| 4083193 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.60 | 54.0 | 3.53e-01 | 100.0% | 39.1% |
| 4926981 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.59 | 49.0 | 5.00e-01 | 98.4% | 91.2% |
| 3980013 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.59 | 53.0 | 3.74e-01 | 100.0% | 44.8% |
| 3925444 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.59 | 45.0 | 3.80e-01 | 80.2% | 56.5% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.58 | 51.0 | 4.64e-01 | 97.6% | 81.2% |
| 2029638 | 71.2.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like | 0.58 | 48.0 | 3.89e-01 | 90.5% | 60.3% |
| 3840054 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.57 | 49.0 | 4.72e-01 | 92.1% | 93.6% |
| 3934509 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.56 | 50.0 | 4.44e-01 | 100.0% | 78.4% |
| 2491331 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 48.0 | 4.42e-01 | 96.8% | 78.7% |
| 3980468 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.54 | 48.0 | 4.46e-01 | 100.0% | 89.1% |
| 3718960 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.53 | 46.0 | 3.95e-01 | 96.8% | 82.4% |
D2
medium
residues 150-237
Domain cluster:
rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00300__D69-148
CATH (63)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.81 | 65.0 | 4.61e-01 | 100.0% | 30.6% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.81 | 59.0 | 4.44e-01 | 100.0% | 34.7% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.79 | 50.0 | 5.91e-01 | 88.6% | 94.9% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.77 | 55.0 | 4.49e-01 | 100.0% | 42.5% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.72 | 63.0 | 3.96e-01 | 96.6% | 19.5% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.71 | 63.0 | 4.34e-01 | 96.6% | 70.3% |
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.71 | 66.0 | 4.25e-01 | 100.0% | 24.6% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.71 | 65.0 | 4.41e-01 | 100.0% | 43.6% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.70 | 61.0 | 3.81e-01 | 96.6% | 17.8% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.70 | 62.0 | 4.31e-01 | 97.7% | 76.1% |
| 1xkwA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.70 | 64.0 | 3.87e-01 | 98.9% | 21.8% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.70 | 64.0 | 4.46e-01 | 100.0% | 44.2% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.69 | 62.0 | 3.94e-01 | 97.7% | 29.5% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.69 | 61.0 | 4.15e-01 | 95.5% | 28.9% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.69 | 63.0 | 4.05e-01 | 100.0% | 36.3% |
| 3efmA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.69 | 63.0 | 3.98e-01 | 100.0% | 34.6% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.69 | 61.0 | 4.21e-01 | 98.9% | 73.0% |
| 1g6q102 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.68 | 61.0 | 4.73e-01 | 97.7% | 72.3% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.68 | 60.0 | 4.37e-01 | 100.0% | 36.8% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.68 | 52.0 | 5.56e-01 | 84.1% | 92.2% |
| 1yq2A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 60.0 | 4.11e-01 | 100.0% | 71.7% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 50.0 | 3.98e-01 | 100.0% | 40.0% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 46.0 | 4.46e-01 | 75.0% | 64.0% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 60.0 | 4.90e-01 | 100.0% | 59.4% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.65 | 58.0 | 4.37e-01 | 96.6% | 60.8% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 54.0 | 4.56e-01 | 100.0% | 54.9% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.65 | 59.0 | 3.50e-01 | 100.0% | 34.2% |
| 3cslA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.64 | 56.0 | 3.36e-01 | 97.7% | 19.0% |
| 3q1nA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 56.0 | 3.94e-01 | 98.9% | 76.5% |
| 2wyhB06 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.64 | 56.0 | 3.98e-01 | 100.0% | 70.7% |
| 4ktpA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.63 | 55.0 | 3.99e-01 | 96.6% | 60.0% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.63 | 53.0 | 4.64e-01 | 96.6% | 61.1% |
| 5nz7A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.63 | 49.0 | 3.37e-01 | 85.2% | 85.9% |
| 3os7A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 54.0 | 3.69e-01 | 97.7% | 67.7% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 56.0 | 4.57e-01 | 100.0% | 52.4% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.62 | 56.0 | 3.93e-01 | 98.9% | 59.5% |
| 2ynkA00 | 2.40.160.130 | Mainly Beta › Beta Barrel › Porin › Capsule assembly protein Wzi | 0.62 | 56.0 | 3.56e-01 | 100.0% | 30.4% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 56.0 | 4.67e-01 | 98.9% | 60.0% |
| 6hswA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 53.0 | 3.46e-01 | 96.6% | 37.8% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.62 | 56.0 | 4.71e-01 | 100.0% | 59.9% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.62 | 54.0 | 3.64e-01 | 98.9% | 67.3% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 54.0 | 4.64e-01 | 98.9% | 63.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.61 | 46.0 | 3.82e-01 | 92.0% | 46.4% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 49.0 | 3.91e-01 | 87.5% | 98.9% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 53.0 | 3.73e-01 | 100.0% | 74.9% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 43.0 | 3.73e-01 | 75.0% | 50.4% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.59 | 51.0 | 3.32e-01 | 100.0% | 85.2% |
| 2pfcA00 | 3.10.129.30 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain | 0.58 | 52.0 | 4.28e-01 | 100.0% | 86.9% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.58 | 51.0 | 3.29e-01 | 96.6% | 70.8% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.58 | 41.0 | 3.92e-01 | 97.7% | 61.9% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 48.0 | 4.05e-01 | 98.9% | 52.9% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.58 | 47.0 | 3.81e-01 | 89.8% | 100.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 3.66e-01 | 90.9% | 42.9% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 50.0 | 3.23e-01 | 98.9% | 89.6% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.56 | 46.0 | 3.52e-01 | 88.6% | 70.2% |
| 2kdyA01 | 2.60.40.1980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 4.00e-01 | 96.6% | 63.4% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.54 | 47.0 | 3.84e-01 | 98.9% | 70.7% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.54 | 48.0 | 3.81e-01 | 100.0% | 49.5% |
| 4ba0A04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 43.0 | 3.73e-01 | 96.6% | 73.8% |
| 3kh8B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.52e-01 | 90.9% | 91.6% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.51 | 43.0 | 3.73e-01 | 98.9% | 66.4% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.65e-01 | 89.8% | 86.7% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.50 | 38.0 | 3.32e-01 | 81.8% | 90.6% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4873102 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.85 | 66.0 | 5.65e-01 | 100.0% | 54.6% |
| 3405242 | 5084.5.1.37 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C | 0.81 | 63.0 | 4.86e-01 | 100.0% | 39.3% |
| 4319395 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.79 | 68.0 | 4.39e-01 | 98.9% | 22.9% |
| 3351533 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.78 | 62.0 | 4.15e-01 | 96.6% | 23.5% |
| 4069053 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.78 | 68.0 | 4.50e-01 | 98.9% | 25.6% |
| 4458963 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.77 | 71.0 | 4.63e-01 | 100.0% | 25.2% |
| 3975988 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.77 | 68.0 | 4.69e-01 | 100.0% | 31.5% |
| 3941832 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.76 | 71.0 | 4.54e-01 | 100.0% | 27.6% |
| 4662377 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.74 | 69.0 | 4.66e-01 | 100.0% | 44.3% |
| 3970343 | 5084.5.1.24 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Gcw_chp | 0.74 | 67.0 | 4.97e-01 | 98.9% | 43.7% |
| 4582939 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.73 | 68.0 | 4.49e-01 | 100.0% | 29.3% |
| 3980456 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.73 | 58.0 | 3.68e-01 | 100.0% | 17.1% |
| 3512269 | 79.1.1.16 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 | 0.73 | 57.0 | 5.66e-01 | 92.0% | 81.1% |
| 4679157 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.72 | 66.0 | 4.25e-01 | 100.0% | 38.4% |
| 4546669 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.72 | 65.0 | 4.16e-01 | 98.9% | 22.5% |
| 4144216 | 5084.5.1.63 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Coleoptericin | 0.72 | 53.0 | 3.65e-01 | 95.5% | 24.0% |
| 3257282 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.70 | 63.0 | 4.30e-01 | 100.0% | 27.8% |
| 4349091 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.70 | 62.0 | 3.96e-01 | 96.6% | 22.0% |
| 5018057 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.70 | 59.0 | 5.24e-01 | 98.9% | 65.0% |
| 3944979 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.69 | 62.0 | 4.62e-01 | 100.0% | 42.7% |
| 3386436 | 5084.4.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 | 0.69 | 61.0 | 4.41e-01 | 100.0% | 37.4% |
| 4947620 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.68 | 62.0 | 4.63e-01 | 100.0% | 72.9% |
| 3243473 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.68 | 60.0 | 4.39e-01 | 100.0% | 70.0% |
| 4928614 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.68 | 54.0 | 4.79e-01 | 98.9% | 59.4% |
| 3829053 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.67 | 47.0 | 4.05e-01 | 72.7% | 50.7% |
| 3942540 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.67 | 61.0 | 3.75e-01 | 100.0% | 18.3% |
| 3550677 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.67 | 50.0 | 3.98e-01 | 100.0% | 38.9% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.67 | 61.0 | 4.99e-01 | 100.0% | 55.6% |
| 3730749 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.67 | 50.0 | 4.68e-01 | 95.5% | 63.6% |
| 3426868 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.67 | 59.0 | 4.62e-01 | 100.0% | 46.7% |
| 3963279 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.67 | 60.0 | 4.09e-01 | 100.0% | 28.1% |
| 3203571 | 9.13.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 | 0.67 | 58.0 | 4.91e-01 | 98.9% | 59.3% |
| 3727006 | 243.1.1.9 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 | 0.66 | 47.0 | 3.78e-01 | 72.7% | 40.9% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.65 | 59.0 | 5.31e-01 | 98.9% | 77.5% |
| 4945418 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 52.0 | 4.46e-01 | 87.5% | 71.4% |
| 3191276 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.64 | 57.0 | 3.77e-01 | 98.9% | 71.9% |
| 3946102 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.64 | 57.0 | 3.59e-01 | 95.5% | 21.7% |
| 3672823 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.64 | 51.0 | 4.23e-01 | 87.5% | 47.5% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.64 | 57.0 | 4.62e-01 | 100.0% | 57.1% |
| 3255874 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.64 | 57.0 | 4.43e-01 | 100.0% | 47.2% |
| 874 | 9.13.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 | 0.63 | 53.0 | 4.64e-01 | 96.6% | 61.1% |
| 4046236 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.63 | 58.0 | 3.52e-01 | 100.0% | 25.5% |
| 5038486 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 53.0 | 4.15e-01 | 94.3% | 90.5% |
| 3478508 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.62 | 56.0 | 4.53e-01 | 100.0% | 51.8% |
| 3695685 | 212.1.1.43 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DUF3684 | 0.62 | 54.0 | 3.80e-01 | 97.7% | 45.4% |
| 4417262 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.62 | 56.0 | 4.56e-01 | 100.0% | 53.3% |
| 3965256 | 5084.5.1.39 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27051 | 0.62 | 55.0 | 3.71e-01 | 98.9% | 27.1% |
| 4515973 | 5084.5.1.32 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › LOC400499 | 0.62 | 53.0 | 3.24e-01 | 93.2% | 16.0% |
| 3252574 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.61 | 53.0 | 4.04e-01 | 100.0% | 58.7% |
| 3875809 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.61 | 56.0 | 4.49e-01 | 100.0% | 53.3% |
| 5071127 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.60 | 52.0 | 3.65e-01 | 100.0% | 61.0% |
| 1760411 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.60 | 47.0 | 4.90e-01 | 93.2% | 92.6% |
| 3591184 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 41.0 | 2.69e-01 | 72.7% | 32.5% |
| 5079500 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 39.0 | 3.14e-01 | 84.1% | 32.8% |
| 4174055 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.58 | 53.0 | 4.12e-01 | 98.9% | 64.1% |
| 4025179 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.58 | 50.0 | 3.93e-01 | 100.0% | 48.8% |
| 3438237 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.57 | 50.0 | 3.64e-01 | 97.7% | 75.1% |
| 3608162 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 45.0 | 3.70e-01 | 93.2% | 69.1% |
| 5063899 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 47.0 | 3.54e-01 | 100.0% | 43.2% |
| 3188398 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 46.0 | 3.53e-01 | 100.0% | 66.2% |
| 3654131 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.51 | 45.0 | 3.75e-01 | 100.0% | 55.0% |