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BML_coassembly_scaffold_41_prodigal-single.1__X__X__00119
Bact-VirBML_coassembly_scaffold_41_prodigal-single.1__X__X__00119
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-20_77-97_133-195
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 49.0 | 4.48e-01 | 80.8% | 75.0% |
| 1fs2A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.64 | 57.0 | 4.22e-01 | 96.2% | 53.3% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.62 | 50.0 | 3.84e-01 | 87.5% | 59.7% |
| 4im6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.61 | 54.0 | 4.43e-01 | 99.0% | 75.3% |
| 1zd9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.58e-01 | 99.0% | 84.9% |
| 3fbtA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 49.0 | 4.54e-01 | 98.1% | 70.5% |
| 4nbrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 53.0 | 3.91e-01 | 98.1% | 69.0% |
| 4ew6A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 51.0 | 4.86e-01 | 97.1% | 94.2% |
| 4p4gA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 50.0 | 4.53e-01 | 98.1% | 70.5% |
| 3ssmC02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 4.11e-01 | 100.0% | 92.9% |
| 3slkA02 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.57 | 48.0 | 3.40e-01 | 99.0% | 29.4% |
| 3etcA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.57 | 51.0 | 3.36e-01 | 100.0% | 67.3% |
| 5g6rA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 50.0 | 4.35e-01 | 97.1% | 71.3% |
| 2c20A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 48.0 | 3.92e-01 | 97.1% | 80.8% |
| 2wq7A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 40.0 | 3.71e-01 | 76.0% | 96.4% |
| 3evtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 4.13e-01 | 94.2% | 72.5% |
| 2dq4A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 4.44e-01 | 97.1% | 90.3% |
| 1vq2A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 49.0 | 4.11e-01 | 98.1% | 87.9% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 47.0 | 4.24e-01 | 96.2% | 89.8% |
| 1lqaA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 47.0 | 3.38e-01 | 100.0% | 57.5% |
| 4ohcC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.45e-01 | 88.5% | 60.6% |
| 2zb4A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 3.93e-01 | 98.1% | 73.5% |
| 3cfyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 4.24e-01 | 97.1% | 76.2% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 4.16e-01 | 97.1% | 73.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3542973 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.65 | 60.0 | 4.06e-01 | 100.0% | 60.0% |
| 3057294 | 207.1.1.162 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29594 | 0.64 | 58.0 | 4.20e-01 | 100.0% | 63.0% |
| 3827140 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 58.0 | 4.94e-01 | 99.0% | 89.3% |
| 3818540 | 207.1.1.134 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 | 0.63 | 57.0 | 3.75e-01 | 100.0% | 44.9% |
| 3214565 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.62 | 56.0 | 4.78e-01 | 100.0% | 84.7% |
| 3465759 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.62 | 56.0 | 4.24e-01 | 100.0% | 66.8% |
| 4015682 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 53.0 | 3.78e-01 | 96.2% | 46.2% |
| 3698306 | 2003.1.1.84 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PRISE | 0.60 | 54.0 | 3.59e-01 | 99.0% | 36.3% |
| 3577992 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 47.0 | 4.29e-01 | 85.6% | 92.1% |
| 4933286 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.59 | 52.0 | 4.16e-01 | 99.0% | 73.8% |
| 3968256 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 52.0 | 3.68e-01 | 100.0% | 51.0% |
| 2554683 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.57 | 50.0 | 4.08e-01 | 100.0% | 77.1% |
| 3859304 | 2487.1.1.13 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small | 0.57 | 43.0 | 3.34e-01 | 80.8% | 60.4% |
| 5032223 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.56 | 49.0 | 3.99e-01 | 98.1% | 75.6% |
| 3940625 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.56 | 48.0 | 3.88e-01 | 97.1% | 67.6% |
| 3740223 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.55 | 47.0 | 4.42e-01 | 97.1% | 77.7% |
| 3931134 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 49.0 | 3.87e-01 | 100.0% | 72.7% |
| 3519188 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 48.0 | 3.71e-01 | 100.0% | 64.9% |
| 4271703 | 2003.1.8.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N | 0.54 | 39.0 | 3.98e-01 | 98.1% | 77.0% |
| 3501950 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.54 | 48.0 | 3.61e-01 | 100.0% | 52.6% |
| 4275183 | 2003.1.1.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK | 0.54 | 48.0 | 4.13e-01 | 100.0% | 61.2% |
| None | — | 0.54 | 47.0 | 3.57e-01 | 98.1% | 87.2% | |
| 1144505 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.54 | 43.0 | 3.43e-01 | 88.5% | 59.1% |
| 200117 | 2003.1.11.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh | 0.54 | 41.0 | 4.31e-01 | 92.3% | 94.4% |
| 4944716 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.52 | 46.0 | 3.70e-01 | 99.0% | 75.1% |
| 4959195 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.51 | 38.0 | 3.55e-01 | 77.9% | 100.0% |
| 4393585 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.51 | 41.0 | 3.59e-01 | 94.2% | 56.9% |
| 4992968 | 2003.1.10.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › PylC-like_N | 0.51 | 42.0 | 4.19e-01 | 92.3% | 88.2% |
| 5079489 | 2003.1.10.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › PylC-like_N | 0.50 | 42.0 | 4.07e-01 | 92.3% | 86.1% |
D2
medium
residues 21-76
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.50 | 42.0 | 3.20e-01 | 100.0% | 79.5% |