←Back to structures
BML_coassembly_scaffold_41_prodigal-single.1__X__X__00161
Bact-VirBML_coassembly_scaffold_41_prodigal-single.1__X__X__00161
Identity
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 180-272
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 52.0 | 4.45e-01 | 100.0% | 68.4% |
| 6c49A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 41.0 | 3.49e-01 | 72.0% | 75.2% |
| 3l2bA02 | 3.40.1390.20 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › HprK N-terminal domain-like | 0.54 | 37.0 | 3.51e-01 | 72.0% | 60.3% |
| 1wd5A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 3.18e-01 | 74.2% | 63.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050561 | 207.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C | 0.68 | 61.0 | 4.31e-01 | 100.0% | 61.8% |
| 3339743 | 207.1.1.104 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_Zer-1 | 0.66 | 55.0 | 4.10e-01 | 95.7% | 63.5% |
| 3785285 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.64 | 56.0 | 3.67e-01 | 100.0% | 36.5% |
| 4802763 | 207.1.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › Recep_L_domain | 0.61 | 54.0 | 4.62e-01 | 100.0% | 86.2% |
| 3532238 | 207.1.1.122 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FAM47 | 0.59 | 51.0 | 4.16e-01 | 100.0% | 76.3% |
| 4856205 | 1032.1.1.2 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore, PF30720 | 0.58 | 46.0 | 3.59e-01 | 88.2% | 79.1% |
| 3711105 | 208.7.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG | 0.54 | 49.0 | 4.18e-01 | 100.0% | 66.7% |
D2
high
residues 462-523
Domain cluster:
rep: BML_coassembly_scaffold_41_prodigal-single.1__X__X__00159__D975-1030
CATH (2)
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081065 | 3761.1.1.5 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › PF26696 | 0.91 | 60.0 | 6.94e-01 | 72.6% | 93.3% |
| 3581699 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.70 | 50.0 | 4.05e-01 | 75.8% | 45.2% |
| 3618546 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.69 | 49.0 | 4.02e-01 | 75.8% | 46.1% |
| 3905730 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.67 | 49.0 | 4.04e-01 | 79.0% | 49.6% |
| 3937854 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.67 | 46.0 | 3.96e-01 | 72.6% | 50.0% |
| 3938083 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 46.0 | 4.03e-01 | 74.2% | 52.6% |
| 3506774 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.65 | 48.0 | 3.91e-01 | 80.6% | 45.0% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.64 | 45.0 | 3.77e-01 | 75.8% | 51.8% |
| 3777778 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 52.0 | 3.54e-01 | 96.8% | 67.1% |
| 3617276 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 45.0 | 3.69e-01 | 77.4% | 45.0% |
| 4479841 | 2.1.1.268 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30833 | 0.62 | 46.0 | 3.19e-01 | 80.6% | 80.5% |
| 3518947 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.62 | 52.0 | 4.24e-01 | 100.0% | 49.2% |
| 4220188 | 2.1.1.224 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 | 0.61 | 44.0 | 3.58e-01 | 79.0% | 64.8% |
| 3583928 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 41.0 | 3.54e-01 | 75.8% | 50.5% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 47.0 | 3.84e-01 | 100.0% | 50.0% |
| 2084081 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.52 | 41.0 | 2.68e-01 | 100.0% | 17.7% |
| 5010031 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.51 | 38.0 | 3.18e-01 | 82.3% | 57.4% |
D3
medium
residues 339-373
Domain cluster:
rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00013__D8-52
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.73 | 55.0 | 5.11e-01 | 100.0% | 70.9% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.72 | 57.0 | 5.29e-01 | 100.0% | 76.5% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.72 | 56.0 | 5.42e-01 | 100.0% | 90.7% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 52.0 | 4.78e-01 | 88.6% | 81.2% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 49.0 | 2.87e-01 | 94.3% | 91.2% |
| 3x3mA01 | 3.30.2390.20 | Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain | 0.62 | 42.0 | 3.28e-01 | 74.3% | 30.5% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 48.0 | 4.04e-01 | 100.0% | 71.8% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 37.0 | 2.28e-01 | 77.1% | 31.1% |
| 6inxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 40.0 | 3.42e-01 | 82.9% | 80.0% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 38.0 | 3.19e-01 | 85.7% | 84.9% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.51 | 39.0 | 3.58e-01 | 85.7% | 62.7% |
| 2gy5A03 | 2.170.300.10 | Mainly Beta › Beta Complex › Tie2 ligand-binding domain fold › Tie2 ligand-binding domain superfamily | 0.50 | 35.0 | 2.61e-01 | 91.4% | 51.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.96 | 87.0 | 4.75e-01 | 100.0% | 8.1% |
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.83 | 69.0 | 6.55e-01 | 100.0% | 90.7% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.81 | 65.0 | 6.26e-01 | 100.0% | 90.7% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.80 | 66.0 | 6.24e-01 | 100.0% | 80.0% |
| 3498702 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.80 | 64.0 | 6.10e-01 | 100.0% | 93.3% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.76 | 61.0 | 5.78e-01 | 100.0% | 86.7% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.75 | 61.0 | 5.37e-01 | 100.0% | 61.8% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.72 | 57.0 | 5.32e-01 | 100.0% | 78.0% |
| 3893040 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.71 | 57.0 | 5.29e-01 | 91.4% | 73.3% |
| 4379527 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.71 | 48.0 | 3.62e-01 | 71.4% | 28.2% |
| 5069323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 54.0 | 4.97e-01 | 94.3% | 72.0% |
| 3667522 | 223.2.1.31 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 | 0.70 | 55.0 | 3.56e-01 | 94.3% | 43.3% |
| 3271846 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.69 | 52.0 | 4.57e-01 | 85.7% | 60.0% |
| 3545467 | 391.1.2.10 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st | 0.69 | 51.0 | 5.03e-01 | 91.4% | 77.5% |
| 3893051 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.68 | 51.0 | 5.12e-01 | 91.4% | 85.7% |
| 3906671 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 46.0 | 4.54e-01 | 74.3% | 85.0% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.67 | 51.0 | 4.62e-01 | 94.3% | 65.5% |
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.67 | 54.0 | 5.30e-01 | 100.0% | 87.5% |
| 4512216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 53.0 | 4.87e-01 | 94.3% | 78.0% |
| 3401459 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.65 | 48.0 | 3.56e-01 | 91.4% | 28.2% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.65 | 49.0 | 4.50e-01 | 94.3% | 65.5% |
| 4889694 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.65 | 48.0 | 4.24e-01 | 88.6% | 98.3% |
| 3926183 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.65 | 47.0 | 2.79e-01 | 80.0% | 11.9% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.64 | 47.0 | 4.53e-01 | 100.0% | 84.0% |
| 3641402 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.60 | 42.0 | 2.78e-01 | 80.0% | 64.6% |
| 3936851 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.59 | 41.0 | 2.39e-01 | 74.3% | 8.6% |
| 4983462 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 47.0 | 3.98e-01 | 97.1% | 81.5% |
| 3699229 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.57 | 48.0 | 2.72e-01 | 100.0% | 21.3% |
| 3790194 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.50 | 39.0 | 3.77e-01 | 94.3% | 100.0% |
D4
medium
residues 383-453
Domain cluster:
rep: MW057854.1__QPB11960.1__X__00051__D43-104