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BML_coassembly_scaffold_41_prodigal-single.1__X__X__00210

Bact-Vir

BML_coassembly_scaffold_41_prodigal-single.1__X__X__00210

Identity

Kingdom:
phage

Quality

94.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-158_378-393
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3geeA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 47.0 5.22e-01 100.0% 95.5%
1dcfA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 45.0 5.01e-01 100.0% 91.7%
2o3rA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 43.0 4.95e-01 94.8% 97.6%
2vycA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 45.0 4.91e-01 100.0% 96.4%
2ex2A02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.60 34.0 4.16e-01 71.1% 90.3%
2bgwB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 43.0 4.79e-01 99.4% 97.7%
5f1yA02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.58 42.0 4.18e-01 100.0% 70.8%
2fiqA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 52.0 4.38e-01 96.5% 79.6%
3cuxA01 3.20.20.360 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 0.57 52.0 3.99e-01 97.7% 74.5%
5vazA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.57 40.0 4.45e-01 97.7% 95.3%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 5.01e-01 99.4% 97.0%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 45.0 4.50e-01 83.2% 90.9%
1reqB01 3.20.20.240 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase 0.56 51.0 3.76e-01 97.1% 51.5%
2czdB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 39.0 3.73e-01 71.1% 84.5%
1e1cA01 3.20.20.240 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase 0.56 49.0 3.49e-01 95.4% 43.5%
4lj3A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.55 49.0 4.34e-01 98.8% 80.9%
3b8iC00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 49.0 4.18e-01 98.8% 74.8%
5dqpB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.54 49.0 3.72e-01 100.0% 97.8%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 49.0 4.65e-01 100.0% 95.6%
3of5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 48.0 4.49e-01 98.8% 99.5%
1jjfA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 4.09e-01 94.2% 91.0%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 49.0 3.93e-01 100.0% 81.5%
3no3A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.53 49.0 4.36e-01 98.8% 90.3%
6jtdA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 48.0 4.19e-01 100.0% 97.0%
6dqoA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 47.0 4.79e-01 98.8% 100.0%
5macA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.52 48.0 3.86e-01 99.4% 78.1%
3eegB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 48.0 4.10e-01 99.4% 70.2%
3n0xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 4.17e-01 99.4% 85.4%
3e53A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 46.0 3.52e-01 97.7% 69.9%
3c48A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 48.0 4.43e-01 100.0% 93.6%
3gqwB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 44.0 3.29e-01 90.8% 90.9%
1rqeA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.96e-01 97.7% 78.5%
1tvlA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 47.0 3.65e-01 100.0% 97.7%
1z06A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 4.66e-01 100.0% 98.8%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 47.0 3.44e-01 100.0% 78.0%
2pz0B00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.52 47.0 4.20e-01 98.3% 92.2%
1exbA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.52 47.0 3.79e-01 98.3% 82.2%
1kczA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 46.0 4.21e-01 98.8% 91.9%
7xjrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 3.92e-01 98.8% 90.3%
3a9iA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 47.0 4.06e-01 98.8% 67.4%
3e48A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 4.42e-01 100.0% 89.6%
1jztA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.51 45.0 4.06e-01 97.1% 82.3%
5w4zA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 47.0 3.46e-01 100.0% 74.4%
3dpuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 4.43e-01 100.0% 98.7%
1ezwA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 46.0 3.63e-01 97.1% 82.1%
3io3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 4.15e-01 97.7% 76.5%
4lgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 46.0 4.54e-01 100.0% 97.4%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260523 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 41.0 4.84e-01 97.1% 95.0%
3511837 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.63 38.0 4.14e-01 95.4% 71.4%
5073152 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.62 44.0 4.91e-01 100.0% 93.2%
5039067 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.60 43.0 4.70e-01 99.4% 92.6%
3201616 2004.1.1.598 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29907 0.59 50.0 5.16e-01 100.0% 95.2%
3719129 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 52.0 3.86e-01 97.7% 73.4%
3637892 2007.9.1.9 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › PF29907 0.57 51.0 5.16e-01 100.0% 96.6%
4996794 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.56 50.0 3.94e-01 96.5% 86.8%
3562065 7516.1.1.107 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C, CHGN 0.56 36.0 2.92e-01 94.2% 33.8%
4246994 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.56 51.0 4.78e-01 100.0% 85.4%
3959021 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 49.0 4.09e-01 96.5% 89.0%
4220150 2002.1.1.105 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C 0.55 47.0 4.36e-01 89.6% 89.7%
3175895 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.55 49.0 3.97e-01 97.1% 72.9%
4290247 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.55 50.0 4.53e-01 100.0% 86.3%
4965218 2004.1.1.85 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.55 50.0 4.13e-01 100.0% 93.0%
5017884 2007.2.1.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.55 46.0 4.49e-01 99.4% 81.6%
None 0.55 50.0 3.37e-01 100.0% 58.7%
3693394 2004.1.1.598 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29907 0.55 49.0 4.83e-01 94.8% 97.2%
3954926 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.55 48.0 3.98e-01 96.5% 88.4%
3278311 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 50.0 4.76e-01 100.0% 97.6%
4362888 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.55 49.0 4.55e-01 99.4% 88.9%
3288192 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 47.0 3.81e-01 94.2% 75.8%
3428868 2002.1.1.19 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.54 48.0 4.26e-01 94.2% 86.5%
3291578 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.54 48.0 4.01e-01 96.5% 92.1%
5059502 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.54 49.0 4.45e-01 100.0% 86.6%
4353911 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.54 49.0 4.49e-01 100.0% 86.4%
4243335 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.54 49.0 4.48e-01 100.0% 95.7%
3959775 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 46.0 4.32e-01 90.8% 91.4%
3289610 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.54 49.0 3.93e-01 100.0% 97.6%
3245696 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.54 48.0 4.15e-01 98.3% 87.3%
4959165 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.53 47.0 3.87e-01 98.3% 90.9%
140029 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 49.0 4.36e-01 98.8% 90.3%
4946757 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.53 46.0 3.76e-01 96.0% 80.6%
4243229 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.53 34.0 3.60e-01 96.0% 70.3%
3185090 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 47.0 4.15e-01 96.5% 82.0%
3290443 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.53 47.0 3.63e-01 100.0% 98.1%
4031729 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 47.0 4.02e-01 98.3% 86.4%
5046789 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 42.0 4.23e-01 86.1% 100.0%
4983917 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.52 48.0 3.78e-01 99.4% 82.6%
3737599 2002.1.1.67 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.52 47.0 3.54e-01 100.0% 68.4%
339021 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.52 47.0 4.20e-01 98.3% 92.2%
3282806 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.51 46.0 3.87e-01 97.1% 73.4%
4501624 2003.1.1.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N 0.51 46.0 4.32e-01 98.8% 94.9%
3708162 2006.1.6.48 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF7163 0.51 46.0 4.45e-01 99.4% 96.0%
4026556 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.51 47.0 3.20e-01 100.0% 64.7%
5066132 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.51 46.0 3.58e-01 97.1% 78.9%
4635446 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.51 33.0 3.09e-01 97.7% 49.1%
3719151 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.51 46.0 3.00e-01 100.0% 49.2%
1240464 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.51 46.0 3.82e-01 100.0% 83.2%
3644001 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.51 42.0 4.08e-01 88.4% 79.5%
4962435 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.50 45.0 3.70e-01 97.1% 85.0%
3449559 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 46.0 4.49e-01 100.0% 96.2%
D2 high residues 159-375
PDB