←Back to structures
BML_coassembly_scaffold_50_prodigal-single.1__X__X__00007
Bact-VirBML_coassembly_scaffold_50_prodigal-single.1__X__X__00007
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-136
Domain cluster:
rep: NUDIX_hydrolase__YP_007354117__Acanthamoeba_polyphaga_moumouvirus__1269028__D1-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00293.35 best | NUDIX | 25.7 | 1.40e-05 | 95.1% | 65.7% |
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dupB01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.78 | 73.0 | 6.39e-01 | 100.0% | 79.5% |
| 4nfwF00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.77 | 72.0 | 6.64e-01 | 100.0% | 81.7% |
| 3hhjB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 71.0 | 6.98e-01 | 100.0% | 96.9% |
| 3i9xA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 71.0 | 6.52e-01 | 100.0% | 89.8% |
| 3qsjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 70.0 | 5.70e-01 | 100.0% | 96.8% |
| 2o5fB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 71.0 | 6.42e-01 | 100.0% | 83.3% |
| 2kdvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 70.0 | 6.33e-01 | 100.0% | 87.2% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.76 | 70.0 | 6.34e-01 | 100.0% | 93.9% |
| 4k6eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 70.0 | 6.63e-01 | 100.0% | 88.9% |
| 2o1cA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 70.0 | 6.57e-01 | 100.0% | 92.5% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 70.0 | 5.93e-01 | 100.0% | 82.8% |
| 2qjoB02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 70.0 | 6.60e-01 | 100.0% | 92.4% |
| 3a6sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.75 | 68.0 | 6.80e-01 | 100.0% | 95.2% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 69.0 | 6.61e-01 | 100.0% | 97.2% |
| 1ryaA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 69.0 | 6.25e-01 | 100.0% | 85.6% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 68.0 | 5.96e-01 | 100.0% | 77.8% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 68.0 | 6.55e-01 | 100.0% | 90.6% |
| 5qoqA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 68.0 | 6.36e-01 | 100.0% | 94.6% |
| 3grnA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.74 | 69.0 | 6.60e-01 | 100.0% | 92.8% |
| 5cfjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 67.0 | 6.47e-01 | 100.0% | 94.3% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 68.0 | 6.74e-01 | 100.0% | 96.1% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 68.0 | 6.36e-01 | 100.0% | 86.5% |
| 6uufA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.73 | 67.0 | 6.25e-01 | 100.0% | 90.1% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 67.0 | 6.34e-01 | 100.0% | 90.4% |
| 4hfqA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 67.0 | 6.44e-01 | 100.0% | 89.9% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 67.0 | 5.84e-01 | 100.0% | 72.5% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.72 | 67.0 | 5.68e-01 | 100.0% | 73.6% |
| 1v8wA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 67.0 | 6.15e-01 | 100.0% | 83.1% |
| 1sjyA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 66.0 | 6.09e-01 | 100.0% | 85.1% |
| 5deqA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 66.0 | 6.37e-01 | 100.0% | 90.6% |
| 1vc9A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 62.0 | 6.32e-01 | 99.2% | 95.9% |
| 3id9B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 59.0 | 5.91e-01 | 100.0% | 86.5% |
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 65.0 | 5.51e-01 | 100.0% | 76.6% |
| 5anvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.71 | 66.0 | 6.10e-01 | 100.0% | 83.7% |
| 3edsA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.70 | 60.0 | 5.91e-01 | 100.0% | 85.0% |
| 2w4eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.70 | 65.0 | 6.25e-01 | 100.0% | 89.1% |
| 1x51A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 64.0 | 6.06e-01 | 100.0% | 88.8% |
| 1mk1A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 64.0 | 5.52e-01 | 100.0% | 71.1% |
| 6u7tA03 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 61.0 | 6.17e-01 | 100.0% | 95.9% |
| 3q91B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 64.0 | 6.28e-01 | 100.0% | 94.7% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 63.0 | 6.20e-01 | 100.0% | 100.0% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.69 | 63.0 | 5.98e-01 | 100.0% | 85.4% |
| 3fjyA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.68 | 62.0 | 5.70e-01 | 100.0% | 92.5% |
| 1k2eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.67 | 62.0 | 5.77e-01 | 100.0% | 86.2% |
| 7x68A01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.61 | 21.0 | 3.16e-01 | 96.7% | 70.0% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.59 | 48.0 | 4.34e-01 | 100.0% | 63.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 31.0 | 3.80e-01 | 95.9% | 85.5% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.55 | 27.0 | 3.31e-01 | 87.8% | 73.3% |
| 2v5gA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.55 | 33.0 | 3.43e-01 | 100.0% | 60.8% |
ECOD (99)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932498 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.79 | 73.0 | 6.60e-01 | 100.0% | 89.1% |
| 3180908 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.78 | 73.0 | 5.18e-01 | 100.0% | 51.0% |
| 3895419 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.78 | 73.0 | 5.39e-01 | 100.0% | 55.9% |
| 5030096 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.77 | 72.0 | 6.51e-01 | 100.0% | 82.8% |
| 3482809 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.77 | 72.0 | 5.31e-01 | 100.0% | 49.3% |
| 3597706 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.77 | 72.0 | 6.32e-01 | 100.0% | 83.3% |
| 3731195 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.77 | 71.0 | 6.27e-01 | 99.2% | 92.0% |
| 135447 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.77 | 72.0 | 6.64e-01 | 100.0% | 81.7% |
| 3722325 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 71.0 | 6.24e-01 | 100.0% | 85.1% |
| 4519665 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 53.0 | 5.51e-01 | 71.5% | 79.1% |
| 3973800 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 70.0 | 6.52e-01 | 100.0% | 86.9% |
| 4429837 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 70.0 | 6.37e-01 | 100.0% | 88.7% |
| 6256 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.76 | 70.0 | 5.88e-01 | 100.0% | 76.2% |
| 4011356 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.75 | 70.0 | 6.38e-01 | 100.0% | 90.0% |
| 3756709 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 70.0 | 6.04e-01 | 100.0% | 76.2% |
| 3614212 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.75 | 70.0 | 5.27e-01 | 100.0% | 80.7% |
| 3221723 | 221.4.1.23 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, PF25969 | 0.75 | 70.0 | 5.39e-01 | 100.0% | 53.8% |
| 3286004 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 70.0 | 6.53e-01 | 100.0% | 94.0% |
| 4963296 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 70.0 | 6.01e-01 | 100.0% | 85.4% |
| 1247755 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 70.0 | 6.40e-01 | 100.0% | 85.4% |
| 4929722 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 70.0 | 6.00e-01 | 100.0% | 84.9% |
| 3509290 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 61.0 | 6.42e-01 | 91.1% | 95.5% |
| 4934087 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 69.0 | 6.02e-01 | 100.0% | 86.1% |
| 4984442 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.75 | 69.0 | 6.02e-01 | 100.0% | 86.7% |
| 4928085 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 6.16e-01 | 100.0% | 77.6% |
| 3958281 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 52.0 | 4.98e-01 | 71.5% | 71.4% |
| 4112358 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 66.0 | 6.25e-01 | 100.0% | 80.7% |
| 143236 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.74 | 69.0 | 6.80e-01 | 100.0% | 95.4% |
| 3899773 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 5.70e-01 | 100.0% | 77.6% |
| 5065093 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 5.95e-01 | 100.0% | 87.0% |
| 3700489 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 5.39e-01 | 100.0% | 78.4% |
| 3989003 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 70.0 | 6.33e-01 | 100.0% | 88.7% |
| 5003496 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 5.75e-01 | 100.0% | 69.5% |
| 3738254 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 5.83e-01 | 100.0% | 81.9% |
| 3514959 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 5.79e-01 | 100.0% | 81.5% |
| 5058019 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 6.49e-01 | 100.0% | 89.6% |
| 3928028 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 69.0 | 6.31e-01 | 100.0% | 92.9% |
| 4051921 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 5.79e-01 | 100.0% | 80.9% |
| 3692759 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 5.02e-01 | 100.0% | 65.0% |
| 3744820 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.74 | 68.0 | 5.41e-01 | 100.0% | 83.0% |
| 1726001 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 5.92e-01 | 100.0% | 76.9% |
| 3402088 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 5.70e-01 | 100.0% | 80.0% |
| 5054408 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 6.19e-01 | 100.0% | 93.8% |
| 3589504 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 5.94e-01 | 100.0% | 75.0% |
| 3955933 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 5.41e-01 | 100.0% | 72.3% |
| 149351 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 6.74e-01 | 100.0% | 96.1% |
| 3882130 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.48e-01 | 100.0% | 80.4% |
| 3967928 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.79e-01 | 100.0% | 82.6% |
| 3818481 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.43e-01 | 100.0% | 72.5% |
| 4963253 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 5.94e-01 | 100.0% | 76.4% |
| 6244 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 6.39e-01 | 100.0% | 87.7% |
| 4937959 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 6.72e-01 | 99.2% | 100.0% |
| 1124600 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 6.39e-01 | 100.0% | 93.0% |
| 3551009 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.53e-01 | 100.0% | 82.3% |
| 5041797 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 6.54e-01 | 99.2% | 91.8% |
| 4944491 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.73 | 67.0 | 6.46e-01 | 100.0% | 91.4% |
| 2754553 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 68.0 | 6.04e-01 | 100.0% | 88.7% |
| 5038162 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.93e-01 | 100.0% | 77.1% |
| 4936617 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.88e-01 | 100.0% | 79.2% |
| 3780755 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.73 | 67.0 | 5.46e-01 | 100.0% | 80.5% |
| None | — | 0.72 | 67.0 | 5.91e-01 | 100.0% | 74.9% | |
| 4990890 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.12e-01 | 100.0% | 89.9% |
| 5029748 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.48e-01 | 100.0% | 95.6% |
| 5001100 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 5.96e-01 | 100.0% | 77.1% |
| 4944415 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 5.96e-01 | 100.0% | 75.9% |
| 3693158 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 66.0 | 5.35e-01 | 100.0% | 74.3% |
| 4953121 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 66.0 | 6.65e-01 | 100.0% | 97.6% |
| 4962638 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.13e-01 | 100.0% | 93.5% |
| 3288973 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 5.46e-01 | 100.0% | 75.8% |
| 3968925 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.38e-01 | 100.0% | 92.1% |
| 4927145 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.31e-01 | 100.0% | 91.0% |
| 4011733 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 66.0 | 6.12e-01 | 100.0% | 93.5% |
| 4656008 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 66.0 | 6.16e-01 | 100.0% | 83.7% |
| 4980017 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 5.86e-01 | 100.0% | 75.4% |
| 5017151 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 66.0 | 6.00e-01 | 100.0% | 76.2% |
| 5027673 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.72 | 67.0 | 6.13e-01 | 100.0% | 84.5% |
| 5051216 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 66.0 | 6.10e-01 | 100.0% | 84.5% |
| 5060978 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 66.0 | 6.33e-01 | 100.0% | 87.9% |
| 3951244 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 66.0 | 6.06e-01 | 100.0% | 85.8% |
| 5039326 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 66.0 | 6.32e-01 | 100.0% | 87.9% |
| 3334359 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 65.0 | 5.68e-01 | 99.2% | 88.9% |
| 3911909 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.71 | 65.0 | 5.35e-01 | 100.0% | 64.1% |
| 3589335 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.71 | 62.0 | 6.37e-01 | 96.7% | 99.1% |
| 3902239 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 65.0 | 5.78e-01 | 100.0% | 80.0% |
| 4960496 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 65.0 | 6.11e-01 | 100.0% | 86.0% |
| 5073188 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.71 | 65.0 | 6.37e-01 | 100.0% | 92.3% |
| 4490625 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.71 | 65.0 | 5.39e-01 | 100.0% | 66.7% |
| 4974972 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 65.0 | 6.10e-01 | 100.0% | 87.2% |
| 5041122 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 64.0 | 5.62e-01 | 100.0% | 73.2% |
| 162532 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 64.0 | 5.39e-01 | 100.0% | 74.8% |
| 5038614 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.70 | 64.0 | 6.27e-01 | 100.0% | 93.1% |
| 3398949 | 221.4.1.3 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX,MRP-L46 | 0.70 | 64.0 | 5.15e-01 | 100.0% | 98.7% |
| 3539647 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.69 | 64.0 | 6.00e-01 | 100.0% | 84.7% |
| 3282801 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.69 | 61.0 | 5.58e-01 | 93.5% | 74.8% |
| 3677800 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.69 | 60.0 | 5.58e-01 | 94.3% | 94.8% |
| 3339477 | 221.4.1.28 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › DUF7915 | 0.69 | 64.0 | 6.13e-01 | 100.0% | 95.0% |
| 3284833 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.68 | 62.0 | 5.81e-01 | 100.0% | 84.7% |
| 3671328 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.68 | 57.0 | 5.99e-01 | 93.5% | 100.0% |
| 3704586 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.67 | 61.0 | 5.59e-01 | 100.0% | 85.0% |
D2
high
residues 452-594
Domain cluster:
rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00623.26 best | RNA_pol_Rpb1_2 | 48.1 | 2.30e-12 | 58.7% | 39.2% |
D3
high
residues 662-760
Domain cluster:
rep: NC_070967.1__YP_010671354.1__PQC17_gp205__00205__D25-115
D4
medium
residues 342-451
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.74 | 39.0 | 3.88e-01 | 72.7% | 48.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.73 | 43.0 | 4.46e-01 | 84.5% | 62.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.69 | 46.0 | 4.67e-01 | 90.0% | 68.2% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 38.0 | 4.00e-01 | 76.4% | 59.8% |
| 3rkoF01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.67 | 37.0 | 3.29e-01 | 70.9% | 36.9% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 39.0 | 4.10e-01 | 85.5% | 62.7% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.64 | 42.0 | 4.67e-01 | 79.1% | 83.9% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 41.0 | 4.30e-01 | 87.3% | 74.2% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.63 | 35.0 | 4.38e-01 | 82.7% | 93.8% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.62 | 35.0 | 4.28e-01 | 80.0% | 92.2% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.62 | 39.0 | 3.78e-01 | 81.8% | 56.2% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.59 | 42.0 | 3.76e-01 | 93.6% | 53.0% |
| 4q5qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 35.0 | 3.65e-01 | 81.8% | 61.0% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.59 | 38.0 | 4.29e-01 | 79.1% | 87.8% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.58 | 43.0 | 3.73e-01 | 97.3% | 49.4% |
| 1iq0A03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.58 | 41.0 | 4.11e-01 | 93.6% | 69.8% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 41.0 | 3.75e-01 | 73.6% | 81.9% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 41.0 | 3.75e-01 | 74.5% | 81.9% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 41.0 | 4.24e-01 | 90.0% | 79.0% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 40.0 | 3.56e-01 | 73.6% | 76.7% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 41.0 | 3.56e-01 | 76.4% | 81.9% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 49.0 | 4.40e-01 | 96.4% | 89.0% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 49.0 | 4.31e-01 | 96.4% | 85.6% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.55 | 34.0 | 3.53e-01 | 80.0% | 63.2% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.55 | 42.0 | 4.05e-01 | 80.9% | 99.2% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 46.0 | 4.50e-01 | 92.7% | 96.8% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 35.0 | 3.56e-01 | 84.5% | 66.7% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 39.0 | 2.91e-01 | 77.3% | 80.7% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 32.0 | 3.12e-01 | 84.5% | 52.9% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 42.0 | 3.78e-01 | 84.5% | 77.9% |
| 2q83A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.52 | 39.0 | 3.12e-01 | 80.9% | 65.2% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 40.0 | 3.44e-01 | 82.7% | 80.3% |
| 4lqqB00 | 1.20.140.30 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator | 0.51 | 40.0 | 3.70e-01 | 95.5% | 63.7% |
| 6hwjA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 40.0 | 3.15e-01 | 85.5% | 45.8% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.51 | 38.0 | 3.83e-01 | 80.0% | 80.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3293738 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.84 | 74.0 | 4.95e-01 | 97.3% | 27.2% |
| 3618547 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.83 | 73.0 | 4.75e-01 | 96.4% | 23.4% |
| 3610049 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.82 | 75.0 | 5.10e-01 | 96.4% | 30.7% |
| 3959944 | 3826.1.1.95 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RNA_pol_Rpb1_1 | 0.82 | 64.0 | 6.85e-01 | 80.9% | 97.9% |
| 3596097 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.82 | 73.0 | 5.07e-01 | 94.5% | 32.5% |
| 3391575 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.81 | 40.0 | 4.73e-01 | 73.6% | 67.5% |
| 4634767 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 74.0 | 5.16e-01 | 97.3% | 34.3% |
| 4648965 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 74.0 | 5.15e-01 | 99.1% | 33.3% |
| 4261674 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 71.0 | 5.01e-01 | 94.5% | 33.9% |
| 4228406 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 72.0 | 5.21e-01 | 96.4% | 37.5% |
| 4513601 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.80 | 70.0 | 4.40e-01 | 93.6% | 19.6% |
| 3185006 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.80 | 72.0 | 4.96e-01 | 97.3% | 31.2% |
| 3584539 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.79 | 40.0 | 4.86e-01 | 74.5% | 73.3% |
| 5030918 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.79 | 37.0 | 4.31e-01 | 70.0% | 61.3% |
| 4815139 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.78 | 67.0 | 6.62e-01 | 90.9% | 87.0% |
| 3286925 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.78 | 45.0 | 4.40e-01 | 84.5% | 53.3% |
| 3527992 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.76 | 41.0 | 5.06e-01 | 74.5% | 82.9% |
| 3410968 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.76 | 42.0 | 5.15e-01 | 78.2% | 85.7% |
| 3753240 | 3291.1.1.54 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 | 0.75 | 42.0 | 3.61e-01 | 77.3% | 35.9% |
| 3774145 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.73 | 39.0 | 3.61e-01 | 72.7% | 42.2% |
| 3285352 | 601.7.1.47 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › RlaP | 0.72 | 34.0 | 3.46e-01 | 70.9% | 44.5% |
| 3926031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.72 | 39.0 | 4.15e-01 | 73.6% | 60.0% |
| 3451986 | 3291.1.1.79 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF1771 | 0.71 | 47.0 | 4.68e-01 | 88.2% | 65.2% |
| 3634474 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.64 | 44.0 | 4.37e-01 | 80.9% | 67.8% |
| 5079107 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 42.0 | 4.00e-01 | 87.3% | 56.9% |
| 3864432 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.64 | 42.0 | 4.56e-01 | 79.1% | 81.1% |
| 3312887 | 4025.1.1.1 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa | 0.63 | 45.0 | 4.03e-01 | 94.5% | 52.9% |
| 3701651 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.63 | 42.0 | 4.43e-01 | 80.0% | 75.8% |
| 3584523 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.61 | 46.0 | 4.06e-01 | 80.0% | 54.4% |
| 5016324 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.61 | 39.0 | 4.19e-01 | 83.6% | 75.8% |
| 3203670 | 601.1.2.48 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › SSXT | 0.60 | 42.0 | 4.48e-01 | 72.7% | 95.8% |
| 3743070 | 601.4.1.60 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TMD0_ABC | 0.59 | 43.0 | 3.80e-01 | 75.5% | 74.2% |
| 4530307 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.58 | 44.0 | 4.20e-01 | 78.2% | 100.0% |
| 3879581 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.58 | 40.0 | 3.76e-01 | 70.9% | 73.3% |
| 4458443 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.58 | 42.0 | 4.16e-01 | 76.4% | 100.0% |
| 5058736 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.57 | 43.0 | 3.42e-01 | 93.6% | 40.0% |
| 4520905 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.56 | 46.0 | 3.46e-01 | 88.2% | 55.2% |
| 3742272 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 44.0 | 4.11e-01 | 82.7% | 97.0% |
| 4255360 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.56 | 46.0 | 3.37e-01 | 88.2% | 71.6% |
| 4673493 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.55 | 42.0 | 4.02e-01 | 79.1% | 96.8% |
| 3705915 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.55 | 44.0 | 4.28e-01 | 84.5% | 97.5% |
| 5001620 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 45.0 | 4.62e-01 | 90.0% | 93.3% |
| 5013711 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.53 | 37.0 | 2.75e-01 | 88.2% | 25.9% |
| 3692560 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.53 | 44.0 | 4.02e-01 | 90.0% | 66.9% |
| 3999841 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.53 | 38.0 | 3.57e-01 | 74.5% | 68.1% |
| 3956160 | 4025.1.1.1 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa | 0.52 | 42.0 | 3.53e-01 | 88.2% | 99.0% |
| 4089545 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.52 | 42.0 | 3.23e-01 | 88.2% | 51.2% |
| 4553494 | 4025.1.1.1 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa | 0.52 | 43.0 | 3.39e-01 | 91.8% | 95.9% |
| 3940559 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.51 | 38.0 | 3.61e-01 | 77.3% | 71.5% |
| 3798487 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.51 | 37.0 | 3.55e-01 | 78.2% | 83.7% |
D5
medium
residues 595-659
Domain cluster:
rep: IMGVR_UViG_3300027784_001646-3300027784-Ga0207421_100044432__D1880-1944
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vbiA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.58 | 40.0 | 2.95e-01 | 73.8% | 83.6% |
| 5erxA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 41.0 | 2.99e-01 | 83.1% | 67.5% |
| 5tvwA01 | 3.40.50.11260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 3.11e-01 | 72.3% | 50.9% |
| 1poxA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.51 | 35.0 | 2.62e-01 | 73.8% | 71.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943823 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.53 | 40.0 | 2.82e-01 | 83.1% | 85.9% |
| 4950650 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 43.0 | 3.03e-01 | 96.9% | 58.7% |
| 4076296 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.52 | 35.0 | 2.24e-01 | 72.3% | 88.0% |