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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00059

Bact-Vir

BML_coassembly_scaffold_50_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00270__D3-91
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 5.35e-01 80.4% 83.9%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 49.0 5.15e-01 83.5% 81.4%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.62e-01 82.5% 67.5%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 4.54e-01 82.5% 82.0%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.33e-01 82.5% 78.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 4.69e-01 81.4% 81.8%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.54e-01 81.4% 70.8%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.61 49.0 4.55e-01 84.5% 93.4%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 31.0 3.51e-01 70.1% 65.3%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.63e-01 92.8% 100.0%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.70e-01 87.6% 77.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.07e-01 81.4% 63.4%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.54e-01 84.5% 86.7%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.59 37.0 3.39e-01 93.8% 47.2%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.59 50.0 4.36e-01 93.8% 98.6%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.55 41.0 4.43e-01 86.6% 97.5%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 36.0 3.85e-01 80.4% 76.7%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 4.01e-01 90.7% 98.6%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 4.00e-01 85.6% 100.0%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 4.41e-01 92.8% 98.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 4.40e-01 87.6% 100.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 40.0 4.23e-01 82.5% 96.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 32.0 3.73e-01 91.8% 89.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.52 44.0 3.98e-01 94.8% 74.6%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 29.0 3.66e-01 84.5% 100.0%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 35.0 3.55e-01 89.7% 70.8%
3fmcA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 35.0 3.87e-01 88.7% 91.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 4.24e-01 91.8% 97.8%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.50 37.0 3.91e-01 78.4% 98.8%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.50 42.0 4.15e-01 96.9% 96.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939076 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 48.0 4.77e-01 80.4% 65.0%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 52.0 4.91e-01 82.5% 63.5%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 51.0 3.27e-01 78.4% 17.8%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 45.0 4.38e-01 81.4% 58.2%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.69 54.0 5.36e-01 82.5% 83.0%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 53.0 5.04e-01 81.4% 71.3%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 5.06e-01 82.5% 76.5%
3298632 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.68 50.0 5.04e-01 81.4% 75.0%
3655242 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.68 53.0 4.47e-01 82.5% 66.9%
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 51.0 5.07e-01 82.5% 76.0%
3926363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 51.0 4.83e-01 83.5% 67.0%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 52.0 4.76e-01 82.5% 64.6%
3737804 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.67 50.0 4.86e-01 81.4% 71.4%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 50.0 4.56e-01 83.5% 60.0%
3648024 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.67 52.0 4.77e-01 82.5% 68.8%
3491895 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.67 50.0 5.00e-01 83.5% 76.0%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 4.74e-01 84.5% 69.5%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 5.16e-01 84.5% 77.1%
4004179 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 46.0 3.51e-01 82.5% 30.4%
3496475 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 51.0 4.51e-01 82.5% 62.1%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 53.0 4.93e-01 85.6% 69.2%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 51.0 4.40e-01 82.5% 57.3%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.68e-01 81.4% 65.8%
3790351 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.65 50.0 4.71e-01 82.5% 71.7%
3414272 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 48.0 4.84e-01 80.4% 78.9%
3483205 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.65 51.0 4.69e-01 84.5% 64.8%
5047735 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 4.30e-01 84.5% 53.7%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.64 48.0 4.67e-01 80.4% 71.8%
3548499 220.1.1.48 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl 0.64 48.0 4.17e-01 80.4% 76.7%
3501905 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.97e-01 83.5% 81.0%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.68e-01 80.4% 76.1%
4978405 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.31e-01 84.5% 58.2%
3583844 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.62 48.0 4.19e-01 82.5% 74.0%
3258838 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.62 49.0 4.24e-01 83.5% 56.7%
3481479 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.61 47.0 4.02e-01 80.4% 69.3%
4947834 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.47e-01 84.5% 72.4%
3791940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.26e-01 75.3% 70.0%
3507234 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 45.0 4.35e-01 83.5% 69.1%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 4.83e-01 88.7% 79.1%
3991186 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 45.0 4.28e-01 83.5% 67.0%
3630302 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 44.0 4.28e-01 83.5% 69.1%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 31.0 3.69e-01 83.5% 73.8%
3260374 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.59 46.0 4.73e-01 87.6% 87.1%
4536182 220.1.1.93 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_6 0.59 45.0 3.87e-01 81.4% 65.8%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 28.0 3.58e-01 75.3% 82.0%
4974740 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.43e-01 87.6% 78.8%
4928853 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.58 47.0 4.46e-01 88.7% 100.0%
4950140 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.57 44.0 4.21e-01 83.5% 100.0%
4948951 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 47.0 4.40e-01 92.8% 100.0%
5069568 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 37.0 3.85e-01 90.7% 74.4%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.54 41.0 3.78e-01 88.7% 63.2%
4985658 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 38.0 4.00e-01 94.8% 89.4%
3164017 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.51 40.0 4.15e-01 85.6% 97.8%
5050247 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.50 35.0 2.47e-01 76.3% 22.9%