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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00069

Bact-Vir

BML_coassembly_scaffold_50_prodigal-single.1__X__X__00069

Identity

Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 40.0 3.10e-01 96.4% 31.6%
2hhpA03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.60 43.0 3.14e-01 75.0% 92.7%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.58 44.0 3.35e-01 87.5% 39.6%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 38.0 2.80e-01 78.6% 23.2%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 3.64e-01 96.4% 52.6%
3s6sB00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 40.0 2.94e-01 76.8% 72.6%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 35.0 3.11e-01 100.0% 42.2%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.29e-01 82.1% 100.0%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.55 44.0 3.47e-01 98.2% 90.7%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.14e-01 73.2% 95.9%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.26e-01 83.9% 100.0%
3ln6A01 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.53 38.0 2.33e-01 76.8% 39.4%
3k59A07 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.52 37.0 2.87e-01 78.6% 40.1%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.51 27.0 2.34e-01 87.5% 23.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954337 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.65 54.0 3.80e-01 96.4% 47.7%
3898067 230.1.1.0 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like 0.62 48.0 3.76e-01 89.3% 70.1%
4222275 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.62 46.0 2.74e-01 82.1% 91.9%
3592902 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.55 45.0 3.41e-01 94.6% 42.8%
5012251 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 36.0 2.60e-01 71.4% 27.6%
3508838 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 2.52e-01 87.5% 27.2%
None — 0.52 42.0 2.63e-01 94.6% 92.3%
3610592 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.51 40.0 2.90e-01 91.1% 35.3%