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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00176

Bact-Vir

BML_coassembly_scaffold_50_prodigal-single.1__X__X__00176

Identity

Kingdom:
phage

Quality

52.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: rep: MK473373.2__QBJ04459.1__X__00114__D37-90
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 47.0 4.77e-01 100.0% 66.7%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 43.0 4.23e-01 100.0% 55.9%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 43.0 3.24e-01 100.0% 25.8%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 45.0 4.61e-01 100.0% 71.2%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 45.0 3.01e-01 72.7% 53.6%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 44.0 3.10e-01 100.0% 23.6%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 39.0 3.81e-01 100.0% 55.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.62 40.0 3.77e-01 100.0% 52.1%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.33e-01 81.8% 83.1%
4houB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 41.0 2.73e-01 78.2% 35.1%
4fzlA01 1.10.150.790 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 46.0 4.10e-01 100.0% 78.2%
6dx5A00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 46.0 3.38e-01 100.0% 45.0%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 44.0 3.05e-01 96.4% 25.1%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 48.0 4.37e-01 100.0% 97.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 40.0 3.88e-01 100.0% 68.8%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 42.0 2.95e-01 100.0% 84.0%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.52 35.0 3.09e-01 100.0% 42.9%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.18e-01 90.9% 100.0%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.64e-01 83.6% 98.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284621 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.70 46.0 3.95e-01 100.0% 43.5%
4628667 605.4.1.13 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PANTS-like 0.70 43.0 4.06e-01 100.0% 52.3%
5040661 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 46.0 4.27e-01 100.0% 57.1%
3731364 3922.1.1.137 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA 0.66 43.0 4.10e-01 100.0% 56.9%
4369209 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.63 44.0 4.87e-01 100.0% 95.3%
3896767 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.60 44.0 3.97e-01 100.0% 57.3%
3640877 101.1.2.627 ↗ alpha arrays › HTH › HTH › winged helix domain › Ovate 0.59 38.0 3.80e-01 98.2% 65.5%
3390835 109.4.1.1807 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26573, PF30504 0.58 43.0 2.49e-01 78.2% 42.0%
3263557 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 44.0 3.40e-01 100.0% 37.5%
3262947 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 40.0 2.99e-01 100.0% 30.4%
3210584 101.1.1.336 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Tri-helical 0.55 41.0 3.66e-01 83.6% 78.8%
3600071 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 39.0 3.70e-01 100.0% 63.1%
4025316 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 44.0 3.11e-01 100.0% 43.4%
3417842 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.50 40.0 2.42e-01 98.2% 62.9%
D2 high residues 94-195
PDB
D3 medium residues 68-93_196-277
PDB