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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00212
Bact-VirBML_coassembly_scaffold_50_prodigal-single.1__X__X__00212
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-88
Domain cluster:
rep: OP380492.1__UXR28879.1__X__00148__D175-282
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a5tA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 32.0 | 4.18e-01 | 85.2% | 95.0% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 44.0 | 4.92e-01 | 92.0% | 96.9% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.62 | 56.0 | 4.45e-01 | 100.0% | 61.2% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.61 | 45.0 | 4.00e-01 | 78.4% | 71.5% |
| 3mkzN00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 46.0 | 4.38e-01 | 98.9% | 70.0% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 47.0 | 4.12e-01 | 95.5% | 59.7% |
| 5t3eB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.57 | 41.0 | 2.99e-01 | 75.0% | 66.5% |
| 1wmwB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 50.0 | 3.46e-01 | 98.9% | 59.2% |
| 3tc1B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 49.0 | 3.39e-01 | 97.7% | 58.0% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 39.0 | 3.35e-01 | 73.9% | 64.1% |
| 3op0A01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.54 | 44.0 | 3.81e-01 | 87.5% | 88.2% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 42.0 | 3.21e-01 | 87.5% | 48.4% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.52 | 42.0 | 3.57e-01 | 90.9% | 73.7% |
| 3dxpA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.52 | 39.0 | 2.91e-01 | 81.8% | 78.8% |
| 4dq5B00 | 1.10.530.50 | Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 | 0.51 | 41.0 | 3.45e-01 | 89.8% | 75.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3654733 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 59.0 | 5.93e-01 | 90.9% | 91.1% |
| 4031503 | 1184.1.1.0 ↗ | 0.67 | 53.0 | 5.25e-01 | 98.9% | 81.1% | |
| 4962547 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.63 | 50.0 | 3.52e-01 | 96.6% | 26.8% |
| 2324002 | 1184.1.1.0 ↗ | 0.62 | 54.0 | 4.98e-01 | 100.0% | 84.7% | |
| 3832681 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 44.0 | 4.33e-01 | 84.1% | 70.5% |
| 4453955 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.60 | 52.0 | 4.71e-01 | 98.9% | 92.8% |
| 4236132 | 3254.1.1.1 ↗ | alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP | 0.59 | 49.0 | 4.90e-01 | 98.9% | 92.2% |
| 4030773 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.58 | 49.0 | 3.61e-01 | 92.0% | 86.0% |
| 3290032 | 101.1.9.126 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Rv2175c_C, Rv2175c_wHTH | 0.58 | 50.0 | 4.67e-01 | 95.5% | 81.5% |
| 5032560 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.58 | 49.0 | 3.39e-01 | 95.5% | 60.0% |
| 4211330 | 3755.4.1.5 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin | 0.57 | 47.0 | 3.69e-01 | 87.5% | 65.6% |
| 3432748 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 42.0 | 4.24e-01 | 96.6% | 84.4% |
| 3391593 | 101.1.17.45 ↗ | alpha arrays › HTH › HTH › FF domain › PF29968 | 0.53 | 40.0 | 3.69e-01 | 77.3% | 86.4% |
| 3831865 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.53 | 37.0 | 3.27e-01 | 72.7% | 70.8% |
| 3271808 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.52 | 44.0 | 3.60e-01 | 92.0% | 87.9% |
| 3952601 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.51 | 37.0 | 4.09e-01 | 81.8% | 95.7% |
| 3935027 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 35.0 | 3.42e-01 | 72.7% | 88.0% |
D2
high
residues 96-190
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.58 | 32.0 | 3.43e-01 | 86.3% | 60.0% |
| 2jvwA01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.56 | 28.0 | 3.40e-01 | 94.7% | 73.3% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 33.0 | 3.65e-01 | 87.4% | 78.1% |
| 4acoA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 34.0 | 3.23e-01 | 84.2% | 55.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388164 | 633.31.1.0 ↗ | alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase | 0.60 | 38.0 | 4.46e-01 | 100.0% | 95.4% |
| 4954053 | 109.2.1.48 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › DUF2264 | 0.59 | 46.0 | 3.11e-01 | 84.2% | 37.6% |
| 3326044 | 192.15.1.1 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 | 0.59 | 38.0 | 3.65e-01 | 89.5% | 55.5% |
| 3312910 | 603.1.1.111 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N | 0.56 | 38.0 | 3.92e-01 | 90.5% | 74.4% |
| 3719985 | 601.14.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin | 0.55 | 41.0 | 3.99e-01 | 98.9% | 71.4% |
| 3715090 | 109.24.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 | 0.54 | 39.0 | 3.76e-01 | 76.8% | 92.2% |