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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00236

Bact-Vir

BML_coassembly_scaffold_50_prodigal-single.1__X__X__00236

Identity

Kingdom:
phage

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-94
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.69 43.0 5.00e-01 80.0% 93.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 38.0 4.05e-01 75.6% 64.9%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 47.0 3.93e-01 84.4% 66.4%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 3.82e-01 87.8% 89.2%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 3.16e-01 76.7% 32.5%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 4.12e-01 80.0% 82.5%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 41.0 3.53e-01 90.0% 52.6%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.54 41.0 3.64e-01 81.1% 75.2%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 38.0 3.24e-01 76.7% 73.9%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 40.0 3.79e-01 86.7% 67.0%
1aogB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.06e-01 84.4% 37.0%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 41.0 3.45e-01 88.9% 100.0%
5agaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.34e-01 93.3% 99.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973303 1049.2.1.3 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 0.77 59.0 5.37e-01 87.8% 62.6%
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.74 54.0 4.14e-01 84.4% 35.8%
3314379 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.63 37.0 4.05e-01 81.1% 72.9%
3588334 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 45.0 4.07e-01 95.6% 56.0%
5049685 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 38.0 3.98e-01 70.0% 67.1%
4594578 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.61 42.0 4.19e-01 71.1% 81.1%
3027339 106.1.1.2 alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.61 38.0 3.20e-01 76.7% 36.1%
4328718 310.2.1.26 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PigN 0.59 41.0 3.69e-01 71.1% 54.4%
3790626 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 37.0 2.72e-01 83.3% 26.4%
3798533 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 41.0 2.97e-01 76.7% 84.2%
4441546 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.55 40.0 3.84e-01 74.4% 78.0%
5067434 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 43.0 3.56e-01 84.4% 76.7%
None 0.53 47.0 2.86e-01 98.9% 30.8%
4026473 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.53 42.0 3.47e-01 85.6% 71.2%
5049514 148.1.3.50 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.52 32.0 3.35e-01 81.1% 65.9%
3929285 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 37.0 3.59e-01 75.6% 83.0%
3522858 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 36.0 3.44e-01 73.3% 62.9%
3640652 5054.1.1.12 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › NCA2 0.50 40.0 3.11e-01 84.4% 57.4%
D2 high residues 105-205
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 50.0 5.22e-01 100.0% 96.8%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 5.00e-01 97.0% 95.7%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 5.17e-01 97.0% 96.2%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 43.0 4.53e-01 100.0% 89.9%
4o65A00 2.60.120.570 Mainly Beta › Sandwich › Jelly Rolls › Particulate methane monooxygenase, b subunit. Chain: A, domain 1 0.56 42.0 3.69e-01 99.0% 52.9%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 41.0 4.34e-01 100.0% 89.0%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 36.0 3.92e-01 98.0% 83.3%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.85e-01 94.1% 82.0%
2oz4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.81e-01 99.0% 78.4%
1a6aB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.85e-01 99.0% 80.6%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.09e-01 94.1% 80.7%
5jtwB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.03e-01 95.0% 81.1%
3i6sA04 2.60.40.2310 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.70e-01 98.0% 71.8%
1c7sA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.83e-01 93.1% 69.7%
6a2bB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.74e-01 99.0% 79.8%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.51 38.0 3.66e-01 100.0% 67.7%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 4.17e-01 100.0% 77.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946545 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.81 63.0 6.86e-01 100.0% 96.5%
3947742 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.81 63.0 6.80e-01 100.0% 95.3%
3385440 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 53.0 5.85e-01 100.0% 96.2%
1562394 1.1.8.6 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.68 62.0 6.11e-01 100.0% 97.2%
4988964 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 50.0 5.42e-01 96.0% 98.8%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.63 50.0 5.31e-01 97.0% 95.6%
4514948 1.1.8.19 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.63 51.0 5.26e-01 100.0% 92.6%
4538458 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 46.0 5.03e-01 97.0% 97.5%
4482267 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 46.0 5.09e-01 99.0% 100.0%
4274453 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.62 47.0 5.03e-01 100.0% 95.3%
3585142 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.61 51.0 4.85e-01 100.0% 75.8%
5022645 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 50.0 5.23e-01 97.0% 98.9%
3726432 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.61 52.0 5.34e-01 97.0% 97.9%
3180074 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.61 51.0 5.24e-01 95.0% 95.8%
3618810 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.61 50.0 4.79e-01 100.0% 77.1%
5083379 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 49.0 5.20e-01 96.0% 98.9%
4016300 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.60 50.0 5.18e-01 95.0% 95.8%
3504502 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.60 51.0 4.89e-01 100.0% 81.6%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 49.0 5.17e-01 97.0% 97.8%
4129006 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.60 50.0 5.14e-01 100.0% 95.8%
3319663 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.59 53.0 4.69e-01 99.0% 77.9%
4952455 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.59 47.0 5.04e-01 96.0% 97.8%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 48.0 4.91e-01 99.0% 95.8%
4230323 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.58 52.0 5.23e-01 100.0% 98.0%
4032992 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 48.0 4.70e-01 100.0% 84.5%
5046974 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.58 52.0 5.19e-01 100.0% 95.2%
4030465 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 51.0 4.62e-01 100.0% 80.7%
3262933 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.16e-01 100.0% 71.3%
3718978 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.57 52.0 4.69e-01 100.0% 90.4%
1284991 11.1.1.69 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Monooxygenase_B 0.56 42.0 3.76e-01 99.0% 55.9%
4278077 304.158.1.1 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Csy2 0.56 49.0 3.59e-01 100.0% 47.8%
4494894 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.55 47.0 4.66e-01 100.0% 90.4%
4601955 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.55 40.0 4.11e-01 100.0% 83.2%
3997793 11.1.1.504 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Dynactin_p62 0.54 48.0 3.81e-01 100.0% 58.6%
3930407 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.12e-01 100.0% 78.2%
3221889 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 4.13e-01 100.0% 84.0%
3363899 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.53 45.0 3.75e-01 97.0% 55.4%
3838576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.97e-01 94.1% 73.9%
3251396 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.98e-01 100.0% 80.0%
3416867 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.87e-01 100.0% 81.1%
3885128 11.1.1.676 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CFAP74_1st 0.52 37.0 3.80e-01 99.0% 77.0%
3265103 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.76e-01 100.0% 70.9%
4027934 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.98e-01 99.0% 69.0%
5060105 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.21e-01 100.0% 84.0%
3261286 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.66e-01 100.0% 73.3%
3527770 11.1.1.1044 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ADGRF3 0.51 35.0 3.61e-01 99.0% 75.8%
3746715 11.1.1.360 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYDIN_VesB_CFA65-like_Ig 0.51 38.0 3.78e-01 100.0% 76.2%
2411955 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.85e-01 100.0% 75.4%
3788320 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.50 40.0 3.90e-01 99.0% 80.0%
D3 high residues 374-493
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.62 46.0 4.16e-01 78.3% 98.8%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.61 33.0 4.31e-01 94.2% 100.0%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.60 45.0 3.96e-01 78.3% 97.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.58 40.0 4.00e-01 70.8% 91.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 4.11e-01 97.5% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 4.19e-01 97.5% 98.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 4.02e-01 98.3% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 30.0 3.89e-01 95.8% 100.0%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.78e-01 75.0% 100.0%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.96e-01 91.7% 80.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 21.0 3.35e-01 89.2% 100.0%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 38.0 2.98e-01 77.5% 50.2%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.75e-01 71.7% 82.0%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.91e-01 82.5% 89.6%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 36.0 3.34e-01 73.3% 84.5%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 3.13e-01 95.8% 87.4%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.80e-01 85.0% 77.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 4.04e-01 75.8% 96.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3100772 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.68 33.0 3.85e-01 82.5% 64.0%
4027701 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 35.0 3.82e-01 82.5% 59.0%
2045057 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.63 46.0 4.15e-01 75.8% 100.0%
3955755 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.63 47.0 4.10e-01 79.2% 98.4%
3284847 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.62 43.0 4.51e-01 70.8% 98.1%
5033471 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.58 44.0 4.63e-01 78.3% 100.0%
3840132 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.58 47.0 4.24e-01 85.8% 86.6%
4927081 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 44.0 4.16e-01 83.3% 92.4%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.56 35.0 4.19e-01 98.3% 98.7%
3237402 5084.4.1.2 beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › DUF7042 0.55 41.0 3.85e-01 77.5% 82.1%
3720660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 34.0 4.09e-01 98.3% 97.3%
3404339 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.55 41.0 3.98e-01 78.3% 90.4%
3279407 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 37.0 3.90e-01 82.5% 75.5%
4783165 5.1.3.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.54 36.0 3.25e-01 70.8% 47.6%
3933168 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 45.0 3.95e-01 91.7% 87.2%
3650579 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.54 39.0 3.72e-01 75.8% 99.3%
3164941 129.1.1.99 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF4131 0.53 30.0 3.24e-01 80.0% 63.0%
3373176 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.53 38.0 3.63e-01 74.2% 98.6%
4606349 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 32.0 3.59e-01 83.3% 77.9%
3991735 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.52 38.0 3.91e-01 76.7% 94.8%
3797107 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.84e-01 84.2% 88.4%
5035327 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 33.0 3.83e-01 81.7% 92.9%
4104949 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 37.0 3.89e-01 77.5% 96.2%
3169357 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 34.0 3.60e-01 73.3% 76.4%
D4 high residues 534-656
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 37.0 4.44e-01 97.6% 96.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4453960 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.70 45.0 5.43e-01 95.9% 100.0%
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.69 53.0 5.84e-01 96.7% 100.0%
4354607 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.67 49.0 4.96e-01 76.4% 77.5%
4027840 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.66 40.0 4.81e-01 98.4% 96.0%
3718413 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.63 40.0 4.83e-01 95.1% 100.0%
D5 medium residues 220-350_503-533
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4isbB02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.74 36.0 4.40e-01 94.4% 70.1%
2vsqA06 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.71 33.0 4.03e-01 95.7% 66.7%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.71 33.0 4.17e-01 95.7% 72.9%
4futA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.70 33.0 3.97e-01 94.4% 66.7%
5uptA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.70 32.0 3.92e-01 94.4% 65.4%
1nnnA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.68 33.0 3.75e-01 94.4% 60.3%
2v7bA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.67 32.0 4.06e-01 94.4% 75.3%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.66 30.0 3.94e-01 96.3% 77.6%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.66 33.0 4.29e-01 95.1% 85.4%
2nclA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.65 32.0 4.34e-01 94.4% 91.4%
3e7wA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.65 32.0 3.78e-01 94.4% 66.7%
1f06A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 33.0 3.59e-01 93.2% 59.4%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.62 33.0 4.07e-01 95.7% 81.2%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 35.0 4.43e-01 93.8% 95.7%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 32.0 4.02e-01 96.3% 87.9%
1egaA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 34.0 4.14e-01 93.8% 84.9%
3iplA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 28.0 3.65e-01 95.1% 89.2%
2e7gA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 32.0 3.90e-01 95.7% 86.8%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 25.0 3.32e-01 93.2% 77.9%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 28.0 3.44e-01 96.9% 76.0%
1gpmA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 33.0 3.98e-01 93.8% 89.8%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 29.0 3.46e-01 97.5% 78.3%
5ey9A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 33.0 3.71e-01 95.1% 81.0%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 28.0 3.39e-01 97.5% 80.6%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.49e-01 97.5% 84.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240580 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.71 33.0 3.75e-01 94.4% 56.8%
3351249 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.70 33.0 3.74e-01 94.4% 56.8%
4980949 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.67 33.0 4.37e-01 95.7% 87.1%
3730813 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.66 34.0 3.73e-01 94.4% 60.0%
4622559 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.62 36.0 4.01e-01 95.7% 70.8%
4608503 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.62 36.0 3.89e-01 93.8% 67.4%
4362441 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.62 35.0 3.90e-01 94.4% 69.2%
3637690 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.61 33.0 3.57e-01 94.4% 60.7%
4081595 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.60 33.0 3.78e-01 94.4% 71.7%
3345597 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.59 32.0 3.55e-01 94.4% 64.8%
3646034 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.59 32.0 3.36e-01 96.3% 56.0%
3248034 327.3.1.1 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.57 34.0 3.08e-01 94.4% 43.7%
4943111 327.3.1.1 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.56 33.0 3.88e-01 93.8% 81.7%
4975902 327.3.1.0 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.55 33.0 3.95e-01 93.8% 89.5%
3272071 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.54 33.0 3.54e-01 95.7% 70.4%