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BML_coassembly_scaffold_50_prodigal-single.1__X__X__00243

Bact-Vir

BML_coassembly_scaffold_50_prodigal-single.1__X__X__00243

Identity

Kingdom:
phage

Quality

52.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-179
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 46.0 4.93e-01 82.4% 73.3%
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.72 36.0 4.32e-01 84.6% 70.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.72 49.0 5.61e-01 94.1% 93.9%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 38.0 4.61e-01 84.6% 78.7%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 44.0 4.74e-01 84.6% 72.8%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 37.0 4.15e-01 79.4% 65.0%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 61.0 6.12e-01 95.6% 93.4%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 39.0 4.64e-01 86.0% 81.8%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 35.0 4.37e-01 80.1% 81.0%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 37.0 4.66e-01 92.6% 88.0%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 38.0 4.26e-01 91.9% 71.2%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.67 36.0 3.95e-01 84.6% 61.7%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 41.0 4.60e-01 82.4% 77.8%
1u5qA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 37.0 4.35e-01 92.6% 77.1%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 50.0 5.48e-01 94.9% 97.2%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.66 36.0 3.95e-01 85.3% 63.7%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 36.0 4.13e-01 79.4% 73.5%
3so5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.36e-01 86.8% 80.0%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 42.0 4.39e-01 94.9% 75.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 4.22e-01 97.8% 66.7%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.61 53.0 5.37e-01 94.9% 94.1%
5suhA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.61 37.0 4.20e-01 83.8% 79.6%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.60 56.0 4.77e-01 99.3% 84.8%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 37.0 3.95e-01 82.4% 70.7%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.59 51.0 5.22e-01 94.1% 96.9%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.59 54.0 5.38e-01 100.0% 95.0%
2pn5A06 2.20.130.20 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › 0.59 31.0 3.63e-01 87.5% 71.3%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 32.0 4.04e-01 78.7% 91.0%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 37.0 4.09e-01 85.3% 79.4%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.54e-01 84.6% 71.1%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 35.0 3.63e-01 98.5% 63.8%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.61e-01 86.0% 72.4%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.57 48.0 4.64e-01 91.9% 84.0%
5lt5A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.56 35.0 3.95e-01 85.3% 83.3%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.34e-01 84.6% 72.6%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 39.0 3.90e-01 80.1% 72.5%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.54 49.0 3.60e-01 100.0% 64.6%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.52 40.0 4.19e-01 80.1% 95.2%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.52 41.0 3.66e-01 83.8% 88.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 4.08e-01 97.1% 81.0%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 46.0 3.39e-01 100.0% 80.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 35.0 4.00e-01 77.9% 59.0%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.71 55.0 6.04e-01 96.3% 99.1%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.71 62.0 6.29e-01 93.4% 99.3%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 61.0 5.90e-01 97.8% 83.3%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.69 58.0 6.04e-01 94.1% 98.4%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.68 52.0 5.75e-01 94.9% 99.1%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.67 50.0 5.63e-01 98.5% 100.0%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.66 51.0 5.57e-01 96.3% 98.2%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 49.0 5.51e-01 91.2% 100.0%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.66 56.0 5.69e-01 91.9% 100.0%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 43.0 4.65e-01 95.6% 78.3%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 40.0 4.43e-01 95.6% 81.0%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.63 59.0 5.71e-01 100.0% 97.3%
4032562 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.63 55.0 5.61e-01 94.1% 98.5%
1117606 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.62 54.0 5.47e-01 93.4% 97.8%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 55.0 4.86e-01 95.6% 82.1%
3964886 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.62 53.0 5.30e-01 92.6% 95.7%
4972329 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.62 36.0 3.72e-01 94.1% 60.0%
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.61 54.0 5.42e-01 100.0% 97.0%
4934997 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.61 34.0 3.59e-01 94.1% 60.0%
5062396 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 53.0 5.32e-01 97.8% 99.3%
3592050 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 30.0 3.10e-01 82.4% 47.4%
3710599 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.58 40.0 3.22e-01 71.3% 62.6%
4923979 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.58 41.0 3.66e-01 72.1% 88.8%
3595076 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.58 40.0 3.21e-01 71.3% 62.6%
5073338 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.57 34.0 3.65e-01 93.4% 67.8%
5067542 11.1.1.244 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_5 0.57 33.0 2.91e-01 85.3% 38.5%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.57 48.0 4.82e-01 97.1% 89.3%
4994607 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.57 32.0 3.46e-01 93.4% 62.6%
3428351 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.56 38.0 3.36e-01 79.4% 47.2%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.56 48.0 4.74e-01 96.3% 91.9%
2387782 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 50.0 4.65e-01 99.3% 96.4%
3959753 3513.1.1.0 a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.55 46.0 4.52e-01 95.6% 84.1%
3461318 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 35.0 3.33e-01 97.1% 53.3%
3953238 3513.1.1.2 a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › LppA 0.54 45.0 4.43e-01 95.6% 82.0%
386453 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.54 40.0 3.77e-01 80.1% 64.4%
4014778 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 48.0 4.01e-01 97.1% 68.1%
5079051 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 33.0 3.51e-01 99.3% 67.5%
4617847 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 40.0 3.40e-01 79.4% 57.0%
4980780 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 31.0 3.33e-01 93.4% 67.3%
4462681 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 41.0 3.46e-01 81.6% 60.4%
4246284 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 3.37e-01 79.4% 57.8%
3657712 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 42.0 3.95e-01 89.7% 68.8%
4331416 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 3.39e-01 79.4% 59.5%
4366827 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 40.0 3.33e-01 80.1% 56.6%
4197078 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 39.0 3.68e-01 79.4% 76.5%
4238046 3112.1.1.1 beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › YabP 0.52 24.0 3.26e-01 77.2% 89.1%
4052592 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 39.0 3.29e-01 79.4% 56.5%
4124427 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 39.0 3.27e-01 79.4% 55.3%
3678951 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 39.0 3.26e-01 79.4% 55.7%
3807657 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.51 39.0 3.18e-01 79.4% 52.4%
4255072 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 38.0 3.43e-01 79.4% 56.9%
5039332 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.51 39.0 3.14e-01 80.1% 53.1%
4472979 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.51 46.0 3.32e-01 99.3% 83.2%
D2 medium residues 248-303
PDB