Back to structures

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00016

Bact-Vir

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00016

Identity

Kingdom:
phage

Quality

90.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.64 41.0 3.15e-01 100.0% 28.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.63 51.0 3.77e-01 91.8% 65.7%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.62 49.0 4.01e-01 88.5% 81.8%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.61 53.0 4.20e-01 100.0% 97.0%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.76e-01 93.4% 64.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.59 50.0 4.95e-01 100.0% 93.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.50e-01 100.0% 77.5%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.58 42.0 3.42e-01 100.0% 40.0%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.61e-01 100.0% 39.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.70e-01 96.7% 90.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.32e-01 78.7% 85.0%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.62e-01 100.0% 50.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 3.84e-01 100.0% 49.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.40e-01 100.0% 36.2%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.35e-01 100.0% 30.4%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.99e-01 100.0% 70.3%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.73e-01 100.0% 79.9%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 47.0 4.06e-01 98.4% 100.0%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 50.0 3.03e-01 100.0% 17.1%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.42e-01 100.0% 38.5%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 46.0 4.58e-01 100.0% 86.2%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.66e-01 100.0% 61.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.56e-01 100.0% 44.8%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.44e-01 100.0% 40.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 41.0 3.62e-01 100.0% 55.4%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.10e-01 100.0% 39.3%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.36e-01 80.3% 76.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 4.20e-01 93.4% 88.7%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.04e-01 96.7% 86.0%
3b83C00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.51e-01 83.6% 85.9%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.93e-01 100.0% 76.0%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.37e-01 82.0% 95.4%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 4.26e-01 86.9% 100.0%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.35e-01 100.0% 52.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.56e-01 77.0% 97.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.36e-01 100.0% 80.7%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.38e-01 100.0% 52.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.77e-01 100.0% 81.5%
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.52 43.0 3.88e-01 91.8% 82.4%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.52 36.0 3.14e-01 73.8% 76.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.37e-01 100.0% 97.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 39.0 4.21e-01 98.4% 100.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.12e-01 95.1% 100.0%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 44.0 2.82e-01 100.0% 69.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.45e-01 100.0% 47.2%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 41.0 3.65e-01 100.0% 60.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 43.0 3.66e-01 98.4% 67.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236998 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.71 63.0 4.42e-01 100.0% 45.6%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.71 60.0 5.53e-01 100.0% 72.5%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.30e-01 100.0% 67.4%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 60.0 4.91e-01 100.0% 55.5%
5062728 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.66 35.0 3.24e-01 80.3% 38.7%
4388029 11.1.1.963 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_71 0.62 41.0 3.32e-01 96.7% 36.5%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 54.0 4.56e-01 100.0% 61.9%
3638041 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.61 42.0 3.68e-01 98.4% 48.9%
4681343 2.10.1.0 beta barrels › OB-fold › CheW › CheW 0.60 47.0 4.13e-01 86.9% 93.7%
4041866 3699.1.1.0 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.60 45.0 4.49e-01 86.9% 78.5%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 47.0 4.70e-01 90.2% 86.2%
5059024 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 41.0 3.60e-01 100.0% 48.9%
3991921 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.24e-01 100.0% 71.1%
3924744 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.58 51.0 3.96e-01 100.0% 57.9%
3491514 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.58 39.0 3.63e-01 100.0% 53.8%
4329871 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 44.0 3.15e-01 98.4% 26.8%
3828316 220.1.1.205 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 0.58 51.0 3.90e-01 100.0% 77.9%
3842576 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.58 50.0 4.09e-01 100.0% 65.0%
5044011 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 39.0 3.68e-01 100.0% 57.3%
4013269 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.57 41.0 3.61e-01 100.0% 52.8%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 48.0 4.33e-01 100.0% 73.3%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.56 48.0 3.59e-01 98.4% 83.6%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.59e-01 100.0% 95.0%
3854303 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.56 41.0 3.73e-01 77.0% 90.0%
3458058 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.56 48.0 3.88e-01 100.0% 63.2%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 44.0 4.51e-01 96.7% 90.0%
3906610 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.55 45.0 3.60e-01 96.7% 72.1%
3698363 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 49.0 3.49e-01 100.0% 42.8%
3719860 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 3.94e-01 100.0% 55.7%
3474366 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.55 47.0 3.68e-01 100.0% 63.6%
4962493 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.55 48.0 4.19e-01 100.0% 95.8%
3845542 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.55 46.0 4.01e-01 100.0% 83.0%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.38e-01 95.1% 87.1%
5081326 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.54 41.0 4.10e-01 82.0% 95.4%
3578278 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 37.0 3.70e-01 100.0% 67.7%
4400596 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 45.0 3.47e-01 100.0% 40.0%
4215717 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.37e-01 100.0% 85.5%
5036165 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.48e-01 100.0% 60.0%
3573645 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.54 39.0 2.64e-01 82.0% 58.6%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 44.0 2.94e-01 98.4% 21.1%
4941845 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.51e-01 96.7% 98.1%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.53 44.0 4.25e-01 100.0% 84.3%
3212138 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 41.0 3.92e-01 86.9% 74.7%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.79e-01 100.0% 58.2%
3861601 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.53 46.0 3.43e-01 100.0% 76.1%
3623941 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 26.0 3.05e-01 77.0% 60.0%
4940419 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 40.0 3.53e-01 83.6% 78.9%
4956474 284.1.1.9 a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.53 46.0 4.47e-01 98.4% 88.6%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.16e-01 98.4% 85.9%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.16e-01 98.4% 34.6%
4014208 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 43.0 3.89e-01 91.8% 82.4%
4934788 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 43.0 4.02e-01 91.8% 92.0%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 39.0 3.14e-01 95.1% 39.3%
4933392 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 43.0 3.92e-01 91.8% 87.5%
3964086 4056.1.1.10 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › ResB 0.51 43.0 3.59e-01 98.4% 99.1%
5055044 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 41.0 3.90e-01 90.2% 96.0%
5055095 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 42.0 3.85e-01 91.8% 87.5%
3208756 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.18e-01 100.0% 77.5%
3779791 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 2.17e-01 75.4% 18.6%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.50 43.0 3.72e-01 100.0% 97.0%
5042577 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 3.88e-01 91.8% 94.7%
5027327 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 3.68e-01 90.2% 81.2%