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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00059

Bact-Vir

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.81 51.0 4.50e-01 83.1% 46.2%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 59.0 5.47e-01 87.7% 65.8%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 53.0 5.14e-01 98.5% 64.8%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.74 52.0 3.73e-01 87.7% 26.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 57.0 4.90e-01 92.3% 55.1%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.71 50.0 4.99e-01 73.8% 72.1%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.71 57.0 5.16e-01 92.3% 65.1%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 52.0 5.00e-01 95.4% 68.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 53.0 4.96e-01 92.3% 65.4%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 53.0 4.64e-01 92.3% 56.4%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 5.28e-01 87.7% 84.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 55.0 5.39e-01 90.8% 80.3%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 50.0 4.32e-01 95.4% 52.0%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 55.0 4.56e-01 98.5% 52.4%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 54.0 4.20e-01 92.3% 56.1%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 46.0 3.44e-01 78.5% 63.5%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 56.0 4.86e-01 100.0% 90.7%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.44e-01 83.1% 88.9%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.60 46.0 4.18e-01 84.6% 61.5%
2or0B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 46.0 3.78e-01 87.7% 50.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 4.00e-01 95.4% 57.9%
4ielA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 3.58e-01 92.3% 44.8%
6k4yI00 1.10.1810.10 Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A 0.57 41.0 3.76e-01 76.9% 85.2%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.44e-01 90.8% 55.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947564 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.76 53.0 5.39e-01 89.2% 73.8%
5060491 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.75 56.0 4.56e-01 92.3% 43.3%
3600606 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.73 56.0 4.02e-01 87.7% 30.3%
3444337 109.4.1.532 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4704 0.65 58.0 3.27e-01 100.0% 23.4%
3593048 564.1.1.0 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.64 48.0 5.11e-01 86.2% 96.4%
3407923 192.24.1.1 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical 0.64 58.0 5.00e-01 100.0% 71.0%
1920927 3748.1.1.4 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › RPN11_C 0.62 46.0 4.06e-01 95.4% 52.5%
4281410 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.57 44.0 4.41e-01 84.6% 86.2%
4952257 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.56 52.0 4.35e-01 100.0% 98.1%