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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00071
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00071
Identity
- Kingdom:
- phage
Quality
95.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-62
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 58.0 | 4.39e-01 | 94.9% | 69.9% |
| 5o7oC01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.64 | 47.0 | 3.68e-01 | 78.0% | 62.4% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.61 | 52.0 | 4.06e-01 | 94.9% | 75.4% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 46.0 | 4.28e-01 | 88.1% | 70.9% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.55 | 39.0 | 3.61e-01 | 74.6% | 100.0% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.54 | 39.0 | 3.76e-01 | 78.0% | 76.1% |
| 3thxA03 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.53 | 47.0 | 3.17e-01 | 100.0% | 60.5% |
| 1twcA01 | 4.10.860.120 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › RNA polymerase II, clamp domain | 0.52 | 43.0 | 3.23e-01 | 88.1% | 42.4% |
| 1nr3A00 | 3.30.1190.10 | Alpha Beta › 2-Layer Sandwich › Dna-binding Protein Tfx; Chain: A; › DNA-binding protein Tfx superfamily, archaea | 0.52 | 37.0 | 3.01e-01 | 79.7% | 37.7% |
| 4pdyA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 42.0 | 2.93e-01 | 96.6% | 76.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3248391 | 2004.5.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Folliculin_C | 0.65 | 51.0 | 3.58e-01 | 84.7% | 92.4% |
| 4944976 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.62 | 47.0 | 3.44e-01 | 83.1% | 68.5% |
| 3858414 | 101.3.1.2 ↗ | alpha arrays › HTH › XPC-binding domain › XPC-binding domain › STI1-HOP_DP | 0.57 | 41.0 | 3.93e-01 | 76.3% | 65.7% |
| 3329742 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.56 | 46.0 | 2.74e-01 | 91.5% | 13.2% |