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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00086

Bact-Vir

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00086

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 68.0 5.62e-01 100.0% 87.4%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 66.0 5.29e-01 98.3% 96.4%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 65.0 5.20e-01 100.0% 87.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 66.0 4.91e-01 100.0% 70.7%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 64.0 5.21e-01 100.0% 85.5%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 64.0 4.97e-01 100.0% 92.2%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 5.09e-01 98.3% 94.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 48.0 4.89e-01 72.4% 77.2%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.64 46.0 3.26e-01 77.6% 31.4%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 42.0 3.04e-01 74.1% 56.2%
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 41.0 3.41e-01 74.1% 95.3%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 47.0 3.37e-01 93.1% 80.6%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 36.0 3.36e-01 72.4% 50.0%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.58 39.0 3.21e-01 84.5% 37.6%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.58 41.0 3.46e-01 79.3% 91.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 39.0 4.14e-01 84.5% 87.2%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.96e-01 74.1% 68.2%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 43.0 3.64e-01 82.8% 66.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 41.0 3.32e-01 79.3% 49.5%
5wvdB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 41.0 3.20e-01 79.3% 69.8%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 49.0 3.47e-01 100.0% 42.4%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 3.01e-01 72.4% 76.6%
5l2qB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 42.0 3.00e-01 87.9% 85.5%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.54 36.0 3.76e-01 81.0% 82.7%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 47.0 3.33e-01 100.0% 39.1%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.53 37.0 3.75e-01 84.5% 78.9%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 33.0 3.49e-01 72.4% 70.0%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 38.0 3.80e-01 93.1% 75.8%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 3.70e-01 81.0% 66.7%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.52 43.0 3.76e-01 93.1% 79.8%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.75e-01 94.8% 17.8%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 42.0 3.47e-01 98.3% 95.1%
3hj6A02 3.40.1620.20 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.52 31.0 3.15e-01 98.3% 55.2%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 43.0 4.01e-01 98.3% 81.8%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 45.0 3.22e-01 100.0% 38.8%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.67e-01 100.0% 66.1%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.82e-01 79.3% 58.2%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 44.0 3.10e-01 100.0% 39.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 44.0 3.23e-01 100.0% 37.4%
3by4A00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 40.0 3.07e-01 100.0% 88.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3791186 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.78 71.0 6.31e-01 100.0% 98.8%
3265019 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 68.0 5.58e-01 100.0% 84.5%
3258309 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 67.0 4.93e-01 100.0% 73.3%
3875067 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 66.0 4.68e-01 100.0% 55.3%
4946598 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 46.0 2.85e-01 100.0% 13.3%
3735848 109.4.1.1553 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.66 57.0 3.12e-01 100.0% 9.1%
3478704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 5.28e-01 94.8% 100.0%
3784559 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 4.20e-01 100.0% 71.5%
4972215 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 47.0 3.22e-01 82.8% 25.7%
3267239 109.4.1.447 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N 0.62 52.0 3.75e-01 100.0% 73.7%
4889754 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 43.0 4.29e-01 74.1% 75.0%
4634499 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.62 41.0 4.12e-01 75.9% 66.7%
5079418 5050.1.1.10 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.62 45.0 3.16e-01 82.8% 25.1%
4946400 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.60 47.0 3.70e-01 86.2% 64.0%
5035483 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 43.0 3.19e-01 79.3% 45.9%
3594674 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.60 42.0 3.22e-01 74.1% 92.6%
3387207 7011.1.1.1 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.59 51.0 3.14e-01 100.0% 18.9%
3592627 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.59 50.0 3.26e-01 94.8% 85.8%
3563732 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 38.0 3.94e-01 72.4% 70.9%
3179779 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.58 40.0 3.51e-01 72.4% 50.0%
3783575 109.4.1.447 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N 0.58 47.0 2.80e-01 100.0% 15.8%
3953144 2007.1.14.19 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C 0.58 51.0 3.70e-01 98.3% 92.9%
3636943 109.4.1.447 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N 0.58 47.0 2.72e-01 100.0% 13.0%
3708854 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 43.0 4.49e-01 93.1% 98.0%
3390804 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.57 33.0 3.38e-01 72.4% 58.2%
3254236 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 43.0 3.54e-01 81.0% 58.1%
3392569 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 42.0 3.28e-01 79.3% 42.4%
3666422 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.56 33.0 3.08e-01 72.4% 43.8%
4975819 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 41.0 2.81e-01 79.3% 75.1%
3859550 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 41.0 3.25e-01 79.3% 45.0%
1442266 7581.1.1.2 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt 0.55 39.0 2.41e-01 75.9% 21.2%
3436497 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 3.77e-01 72.4% 81.7%
3164582 4353.1.1.1 a/b three-layered sandwiches › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › DUF1919 0.55 45.0 3.26e-01 96.6% 44.7%
4336252 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 45.0 3.79e-01 94.8% 97.1%
3295298 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.55 37.0 3.75e-01 70.7% 81.8%
3679460 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 46.0 3.75e-01 100.0% 93.9%
3258060 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.54 32.0 3.11e-01 94.8% 47.1%
3427984 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 36.0 3.13e-01 70.7% 98.9%
3867404 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.53 40.0 3.97e-01 82.8% 93.3%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 39.0 3.37e-01 79.3% 58.9%
3439077 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 37.0 3.24e-01 75.9% 97.9%
3617026 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.44e-01 77.6% 36.3%
3403082 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.23e-01 100.0% 29.1%
3992836 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 3.46e-01 74.1% 58.6%
3624033 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 36.0 2.99e-01 72.4% 37.4%
4503505 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.53 41.0 3.29e-01 86.2% 98.3%
3543340 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.52 38.0 3.90e-01 79.3% 92.6%
3761032 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.52 43.0 3.71e-01 100.0% 84.8%
3468012 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.52 35.0 3.55e-01 70.7% 75.0%
3962539 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.52 46.0 2.64e-01 100.0% 10.7%
4959133 2007.1.14.19 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C 0.52 42.0 3.08e-01 91.4% 93.8%
3742452 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 2.78e-01 98.3% 21.7%
3344139 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.68e-01 72.4% 80.0%
3675412 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.51 38.0 3.42e-01 79.3% 100.0%
3460584 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.51 34.0 3.59e-01 70.7% 80.0%
3898301 233.1.1.2 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.51 44.0 3.78e-01 98.3% 75.8%
3310393 386.1.1.207 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.51 46.0 4.31e-01 100.0% 88.6%
4017003 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.51 41.0 2.57e-01 89.7% 15.5%
3666958 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 46.0 4.27e-01 100.0% 83.6%
3317170 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.51 33.0 3.59e-01 72.4% 86.7%
4873615 233.1.1.2 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.51 41.0 3.55e-01 91.4% 76.1%
3925231 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 34.0 3.39e-01 70.7% 73.3%
3747562 386.1.1.64 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 0.50 34.0 3.38e-01 70.7% 71.7%
3324892 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.50 35.0 3.02e-01 75.9% 82.7%