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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00168
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00168
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.78 | 41.0 | 4.25e-01 | 85.7% | 54.8% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.67 | 53.0 | 5.55e-01 | 96.1% | 92.8% |
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 4.58e-01 | 83.1% | 74.0% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 37.0 | 4.18e-01 | 81.8% | 74.1% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 37.0 | 3.59e-01 | 83.1% | 49.4% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 4.10e-01 | 81.8% | 78.6% |
| 1y6uA01 | 3.90.105.50 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › | 0.60 | 32.0 | 3.74e-01 | 81.8% | 77.6% |
| 6pw7A01 | 1.10.238.180 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.60 | 41.0 | 4.18e-01 | 81.8% | 73.3% |
| 5nl9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 4.07e-01 | 83.1% | 66.7% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 47.0 | 4.34e-01 | 83.1% | 67.4% |
| 7o1rA01 | 1.10.489.10 | Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like | 0.59 | 42.0 | 3.07e-01 | 83.1% | 28.1% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.59 | 49.0 | 3.78e-01 | 88.3% | 98.8% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 35.0 | 4.03e-01 | 83.1% | 86.5% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.58 | 48.0 | 3.73e-01 | 88.3% | 96.9% |
| 3rgoA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 45.0 | 3.53e-01 | 81.8% | 74.5% |
| 3fdiB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 49.0 | 3.74e-01 | 93.5% | 87.7% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.57 | 31.0 | 3.34e-01 | 85.7% | 58.5% |
| 4ttrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 47.0 | 3.50e-01 | 90.9% | 86.1% |
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 47.0 | 3.56e-01 | 89.6% | 44.4% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.74e-01 | 96.1% | 85.7% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.55 | 42.0 | 4.22e-01 | 85.7% | 77.5% |
| 3emuA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 45.0 | 3.65e-01 | 88.3% | 82.6% |
| 1uwdA00 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.55 | 44.0 | 4.07e-01 | 90.9% | 73.5% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 48.0 | 3.77e-01 | 100.0% | 91.4% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 49.0 | 3.83e-01 | 100.0% | 96.1% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 45.0 | 3.53e-01 | 92.2% | 66.7% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.53 | 40.0 | 4.21e-01 | 84.4% | 95.7% |
| 4m5bA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 43.0 | 3.25e-01 | 96.1% | 91.6% |
| 1b0uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.78e-01 | 87.0% | 24.8% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 39.0 | 3.73e-01 | 83.1% | 79.3% |
| 2nt2A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 45.0 | 3.66e-01 | 96.1% | 77.5% |
| 1zzwA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 45.0 | 3.61e-01 | 94.8% | 75.5% |
| 2pt7G01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 41.0 | 4.15e-01 | 93.5% | 98.7% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 43.0 | 3.52e-01 | 96.1% | 75.5% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4887380 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.70 | 40.0 | 3.55e-01 | 77.9% | 40.2% |
| 4088893 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.69 | 47.0 | 3.60e-01 | 81.8% | 30.9% |
| 4663141 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 46.0 | 4.01e-01 | 81.8% | 45.0% |
| 5051504 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.67 | 44.0 | 4.50e-01 | 83.1% | 69.3% |
| 3246334 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.67 | 53.0 | 4.96e-01 | 84.4% | 77.9% |
| 1346040 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.65 | 50.0 | 4.64e-01 | 83.1% | 77.8% |
| 3837566 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.65 | 51.0 | 4.56e-01 | 83.1% | 67.6% |
| 3796793 | 108.1.1.26 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 | 0.65 | 41.0 | 4.13e-01 | 84.4% | 62.5% |
| 3850676 | 153.1.1.0 ↗ | extended segments › Transducin (heterotrimeric G protein), gamma chain › Transducin (heterotrimeric G protein), gamma chain › Transducin (heterotrimeric G protein), gamma chain | 0.64 | 50.0 | 3.85e-01 | 83.1% | 46.7% |
| 3499511 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 49.0 | 4.38e-01 | 83.1% | 75.5% |
| 3668847 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.63 | 49.0 | 4.37e-01 | 83.1% | 66.4% |
| 3419993 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 49.0 | 3.11e-01 | 83.1% | 20.0% |
| 3741972 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.82e-01 | 83.1% | 81.2% |
| 5058943 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 41.0 | 3.56e-01 | 83.1% | 43.3% |
| 4012282 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.60 | 37.0 | 3.91e-01 | 74.0% | 70.8% |
| 3976327 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.59 | 35.0 | 4.16e-01 | 76.6% | 100.0% |
| 3273259 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 45.0 | 3.18e-01 | 83.1% | 27.8% |
| 3349824 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 39.0 | 3.76e-01 | 83.1% | 60.0% |
| 4176831 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 3.87e-01 | 87.0% | 72.6% |
| 3596510 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.58 | 48.0 | 3.52e-01 | 88.3% | 94.9% |
| 4377496 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.57 | 42.0 | 3.04e-01 | 100.0% | 27.1% |
| 4394509 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.56 | 47.0 | 3.52e-01 | 92.2% | 73.1% |
| 4020853 | 108.3.1.1 ↗ | alpha arrays › EF-hand › Cloroperoxidase › Cloroperoxidase › Peroxidase_2 | 0.56 | 46.0 | 4.10e-01 | 90.9% | 67.3% |
| 4220958 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.56 | 48.0 | 3.63e-01 | 94.8% | 83.2% |
| 3511073 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.54 | 47.0 | 3.47e-01 | 92.2% | 64.3% |
| 3614991 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 42.0 | 3.83e-01 | 81.8% | 64.0% |
| 3382586 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.54 | 48.0 | 3.74e-01 | 98.7% | 90.9% |
| 3601396 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.53 | 48.0 | 3.54e-01 | 98.7% | 92.0% |
| 4645406 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 48.0 | 3.80e-01 | 100.0% | 90.5% |
| 1160074 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 49.0 | 3.78e-01 | 100.0% | 92.0% |
| 3217061 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 48.0 | 3.79e-01 | 100.0% | 91.3% |
| 3596031 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.53 | 48.0 | 3.78e-01 | 100.0% | 91.3% |
| 4883417 | 108.3.1.1 ↗ | alpha arrays › EF-hand › Cloroperoxidase › Cloroperoxidase › Peroxidase_2 | 0.53 | 45.0 | 3.77e-01 | 97.4% | 54.3% |
| 4453176 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 48.0 | 3.75e-01 | 100.0% | 90.8% |
| 3993211 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.53 | 43.0 | 3.48e-01 | 92.2% | 82.5% |
| None | — | 0.53 | 47.0 | 3.57e-01 | 100.0% | 82.7% | |
| 384378 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.53 | 45.0 | 4.12e-01 | 98.7% | 74.8% |
| 3609227 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.53 | 45.0 | 3.39e-01 | 96.1% | 72.0% |
| 3254140 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.53 | 48.0 | 3.65e-01 | 100.0% | 92.0% |
| 3640677 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.52 | 47.0 | 3.78e-01 | 100.0% | 91.5% |
| 4371931 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.52 | 42.0 | 3.24e-01 | 90.9% | 82.7% |
| 4483715 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 41.0 | 3.24e-01 | 90.9% | 88.9% |
| 3617340 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.51 | 41.0 | 3.79e-01 | 93.5% | 78.2% |
| 3556247 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.51 | 45.0 | 3.52e-01 | 96.1% | 68.1% |
| 3259936 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.51 | 45.0 | 3.41e-01 | 96.1% | 65.1% |