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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00324

Bact-Vir

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00324

Identity

Kingdom:
phage

Quality

92.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 57.0 4.83e-01 86.2% 93.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 43.0 3.10e-01 86.2% 22.1%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.69 38.0 3.48e-01 98.3% 39.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.12e-01 100.0% 65.1%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.68 50.0 3.64e-01 77.6% 69.9%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.67 45.0 3.22e-01 70.7% 39.9%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.66 45.0 4.04e-01 72.4% 82.1%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.66 42.0 3.38e-01 91.4% 33.0%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 52.0 3.15e-01 91.4% 26.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.63 46.0 4.08e-01 77.6% 57.1%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 52.0 3.32e-01 93.1% 45.2%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.45e-01 86.2% 63.2%
3o6uC00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.62 42.0 3.38e-01 70.7% 95.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 4.41e-01 100.0% 51.8%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 3.59e-01 86.2% 36.6%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.64e-01 91.4% 73.3%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.70e-01 75.9% 63.8%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 44.0 3.40e-01 79.3% 75.9%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 43.0 3.67e-01 77.6% 94.8%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 3.83e-01 81.0% 64.8%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.59 47.0 3.11e-01 91.4% 33.8%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.59 47.0 4.40e-01 100.0% 70.1%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.59 49.0 3.20e-01 93.1% 41.4%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 3.02e-01 91.4% 27.6%
1ulvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.77e-01 77.6% 80.2%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 34.0 2.02e-01 98.3% 6.6%
2wddA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 48.0 3.13e-01 96.6% 90.0%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 39.0 3.07e-01 70.7% 83.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.07e-01 86.2% 63.0%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 46.0 3.85e-01 100.0% 52.0%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 38.0 3.14e-01 70.7% 85.2%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 2.86e-01 98.3% 22.4%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.56e-01 91.4% 80.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.73e-01 93.1% 95.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.12e-01 100.0% 66.7%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.16e-01 98.3% 69.8%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 39.0 2.80e-01 75.9% 43.3%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.22e-01 93.1% 80.5%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.55e-01 89.7% 74.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.72e-01 100.0% 72.3%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.52 42.0 3.15e-01 93.1% 43.5%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 45.0 3.50e-01 100.0% 91.7%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 44.0 2.70e-01 100.0% 23.5%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.48e-01 98.3% 96.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.52e-01 94.8% 72.6%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4679171 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.78 52.0 4.10e-01 70.7% 34.8%
4221376 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.75 51.0 3.88e-01 70.7% 31.5%
3242544 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 68.0 5.19e-01 100.0% 65.4%
4632081 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.75 50.0 3.83e-01 70.7% 32.0%
4067862 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.75 49.0 3.90e-01 70.7% 33.9%
4628536 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.74 49.0 3.89e-01 70.7% 34.8%
4606103 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.73 49.0 3.86e-01 70.7% 33.3%
4294687 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.73 48.0 3.81e-01 70.7% 33.9%
4564098 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.73 48.0 3.75e-01 70.7% 32.5%
4659536 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 48.0 3.77e-01 70.7% 32.0%
4037664 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 49.0 3.80e-01 70.7% 32.8%
4680971 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 49.0 3.79e-01 70.7% 32.8%
4333153 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 49.0 3.75e-01 70.7% 35.4%
4306959 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 48.0 3.71e-01 70.7% 32.0%
4259228 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 46.0 3.79e-01 70.7% 35.5%
4557706 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 48.0 3.58e-01 70.7% 28.3%
4219295 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 47.0 3.61e-01 70.7% 30.8%
4216155 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 46.0 3.65e-01 70.7% 32.5%
4076432 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 47.0 3.66e-01 70.7% 32.0%
4200618 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 47.0 3.80e-01 70.7% 35.7%
4600693 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 47.0 3.70e-01 70.7% 32.8%
4969580 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.69 47.0 3.15e-01 70.7% 19.5%
4438376 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 47.0 3.72e-01 70.7% 35.8%
4954572 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 47.0 3.70e-01 70.7% 34.2%
4299507 3256.1.1.2 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.69 40.0 4.96e-01 89.7% 97.1%
4099418 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 47.0 3.66e-01 70.7% 60.8%
4161288 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 45.0 3.48e-01 70.7% 28.9%
4564292 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 46.0 3.66e-01 70.7% 34.8%
4541656 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 46.0 3.67e-01 70.7% 37.5%
4010765 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 46.0 3.62e-01 70.7% 32.8%
5046724 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 46.0 3.70e-01 70.7% 35.7%
4103800 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 46.0 3.62e-01 70.7% 34.2%
4107517 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.79e-01 70.7% 39.0%
4115185 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.51e-01 70.7% 31.5%
4639619 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.44e-01 70.7% 66.9%
5035818 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.66e-01 70.7% 37.4%
4505784 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.60e-01 70.7% 34.2%
4505130 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.56e-01 70.7% 67.2%
4218926 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.62e-01 70.7% 34.2%
4144742 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 45.0 3.58e-01 70.7% 35.0%
4632256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.37e-01 100.0% 94.7%
4532859 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.83e-01 100.0% 95.0%
4508401 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 53.0 4.16e-01 89.7% 77.6%
3963078 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.65 49.0 4.36e-01 81.0% 70.6%
4397552 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 44.0 3.50e-01 70.7% 35.2%
4206673 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 44.0 3.47e-01 70.7% 32.8%
3509551 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 50.0 4.50e-01 86.2% 75.3%
4039156 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 42.0 3.49e-01 70.7% 35.5%
4253671 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 44.0 3.26e-01 70.7% 28.4%
3199439 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 3.57e-01 87.9% 84.7%
5070306 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.63e-01 100.0% 79.0%
4377336 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.64 44.0 3.39e-01 70.7% 30.4%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.29e-01 100.0% 88.6%
4130139 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.63 50.0 3.75e-01 86.2% 37.9%
5003854 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.63 43.0 3.45e-01 70.7% 35.7%
3965943 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.62 52.0 3.63e-01 93.1% 73.6%
4555995 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 42.0 3.37e-01 70.7% 56.7%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.76e-01 100.0% 67.1%
4544592 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 42.0 3.21e-01 70.7% 35.7%
3490071 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.61 51.0 3.39e-01 100.0% 23.0%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 53.0 4.69e-01 100.0% 67.1%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.75e-01 100.0% 77.3%
4953373 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.60 42.0 3.23e-01 74.1% 78.2%
4309203 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 48.0 3.43e-01 91.4% 75.6%
3730011 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 52.0 3.90e-01 100.0% 40.7%
3956060 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.58 46.0 3.36e-01 86.2% 37.7%
3536857 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.58 48.0 3.44e-01 91.4% 79.4%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 48.0 3.75e-01 98.3% 45.0%
4395961 212.1.1.14 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.54 45.0 3.21e-01 91.4% 71.8%
3387200 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.54 44.0 3.88e-01 96.6% 82.1%
4446877 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 43.0 2.79e-01 87.9% 55.1%
3520265 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 47.0 3.47e-01 96.6% 60.7%