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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00383
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00383
Identity
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-57
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cs1A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.90 | 61.0 | 4.89e-01 | 70.6% | 39.1% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.84 | 59.0 | 5.05e-01 | 98.0% | 48.1% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.79 | 69.0 | 5.98e-01 | 100.0% | 72.2% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.77 | 52.0 | 4.52e-01 | 70.6% | 55.8% |
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.77 | 62.0 | 5.10e-01 | 90.2% | 50.6% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.73 | 51.0 | 4.27e-01 | 100.0% | 42.2% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.73 | 46.0 | 4.67e-01 | 72.5% | 64.7% |
| 2bsqA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.69 | 56.0 | 4.11e-01 | 92.2% | 56.6% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 60.0 | 5.13e-01 | 100.0% | 77.1% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 57.0 | 5.01e-01 | 100.0% | 67.9% |
| 1x3zA03 | 1.10.1740.90 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.68 | 49.0 | 4.13e-01 | 78.4% | 47.7% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 45.0 | 4.27e-01 | 100.0% | 56.9% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 45.0 | 4.75e-01 | 72.5% | 100.0% |
| 3v7dD01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.66 | 54.0 | 4.37e-01 | 98.0% | 47.0% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 52.0 | 3.52e-01 | 86.3% | 28.7% |
| 4ou7A00 | 1.10.8.1180 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 55.0 | 5.05e-01 | 100.0% | 73.2% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 45.0 | 3.28e-01 | 72.5% | 35.0% |
| 1af7A01 | 1.10.155.10 | Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0.65 | 54.0 | 4.80e-01 | 100.0% | 80.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 46.0 | 4.28e-01 | 100.0% | 59.7% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 44.0 | 3.04e-01 | 72.5% | 36.4% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 49.0 | 4.09e-01 | 90.2% | 53.1% |
| 2x43S00 | 6.10.140.1430 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 42.0 | 3.94e-01 | 72.5% | 73.1% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 51.0 | 4.25e-01 | 100.0% | 52.6% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 51.0 | 3.81e-01 | 100.0% | 89.1% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.60 | 43.0 | 3.68e-01 | 80.4% | 59.3% |
| 2zuvA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 41.0 | 2.47e-01 | 72.5% | 27.2% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 41.0 | 3.01e-01 | 72.5% | 52.3% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 3.46e-01 | 100.0% | 96.3% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 50.0 | 3.14e-01 | 100.0% | 71.2% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.56 | 45.0 | 3.61e-01 | 100.0% | 66.7% |
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.55 | 38.0 | 3.47e-01 | 74.5% | 50.7% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.55 | 43.0 | 3.76e-01 | 88.2% | 58.0% |
| 2vfrA05 | 1.10.45.10 | Mainly Alpha › Orthogonal Bundle › Vanillyl-alcohol Oxidase; Chain A, domain 4 › Vanillyl-alcohol Oxidase; Chain A, domain 4 | 0.55 | 37.0 | 4.06e-01 | 80.4% | 94.7% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 46.0 | 3.46e-01 | 100.0% | 82.0% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 36.0 | 2.74e-01 | 72.5% | 99.2% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 43.0 | 2.90e-01 | 100.0% | 58.4% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 40.0 | 3.02e-01 | 100.0% | 72.7% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 42.0 | 3.62e-01 | 98.0% | 90.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.94 | 64.0 | 6.01e-01 | 70.6% | 60.0% |
| 3268169 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.93 | 63.0 | 4.89e-01 | 70.6% | 36.0% |
| 3398172 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.92 | 62.0 | 4.74e-01 | 70.6% | 34.3% |
| 4277445 | 142.3.1.4 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › YqzH | 0.80 | 70.0 | 6.88e-01 | 98.0% | 100.0% |
| 4948461 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.79 | 66.0 | 6.76e-01 | 98.0% | 100.0% |
| 4251437 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.79 | 66.0 | 3.87e-01 | 100.0% | 12.4% |
| 4600245 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.78 | 53.0 | 4.55e-01 | 70.6% | 46.8% |
| 5080558 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.77 | 65.0 | 6.60e-01 | 96.1% | 96.0% |
| 4863395 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.77 | 52.0 | 4.62e-01 | 70.6% | 49.3% |
| 4993551 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.77 | 68.0 | 5.36e-01 | 100.0% | 49.0% |
| 4953164 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.77 | 65.0 | 6.42e-01 | 98.0% | 89.1% |
| 5072245 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.76 | 65.0 | 6.43e-01 | 100.0% | 90.9% |
| 4942992 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.75 | 63.0 | 6.42e-01 | 96.1% | 96.0% |
| 3596625 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 65.0 | 5.93e-01 | 100.0% | 84.3% |
| 4167763 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 62.0 | 3.70e-01 | 100.0% | 12.7% |
| 4948317 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.73 | 61.0 | 6.21e-01 | 96.1% | 98.0% |
| 4579424 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.73 | 51.0 | 3.27e-01 | 72.5% | 16.2% |
| 3309955 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.73 | 61.0 | 5.02e-01 | 100.0% | 52.0% |
| 4973086 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.73 | 63.0 | 6.21e-01 | 100.0% | 92.7% |
| 5016525 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 60.0 | 5.28e-01 | 100.0% | 61.3% |
| 4984693 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.73 | 62.0 | 6.29e-01 | 98.0% | 100.0% |
| 4120356 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.72 | 60.0 | 4.94e-01 | 100.0% | 50.0% |
| 4299866 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.71 | 58.0 | 5.64e-01 | 100.0% | 83.3% |
| 5035316 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.70 | 45.0 | 2.96e-01 | 72.5% | 15.5% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.69 | 58.0 | 5.66e-01 | 100.0% | 88.1% |
| 3583897 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 58.0 | 5.34e-01 | 100.0% | 85.7% |
| 3934535 | 103.11.1.0 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related | 0.67 | 54.0 | 5.27e-01 | 100.0% | 86.7% |
| 5028601 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.65 | 49.0 | 3.86e-01 | 86.3% | 59.2% |
| 4927979 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.65 | 45.0 | 4.35e-01 | 74.5% | 70.0% |
| 3995593 | 142.1.1.28 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RIIa | 0.65 | 53.0 | 4.85e-01 | 100.0% | 78.7% |
| 4480828 | 541.1.1.1 ↗ | alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › RIIa | 0.64 | 52.0 | 5.01e-01 | 96.1% | 90.0% |
| 3870903 | 103.1.1.53 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th | 0.61 | 52.0 | 4.99e-01 | 100.0% | 85.0% |
| 5013255 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.60 | 49.0 | 4.56e-01 | 100.0% | 88.6% |
| 3334463 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.60 | 44.0 | 3.36e-01 | 82.4% | 63.7% |
| 3971367 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.58 | 42.0 | 3.75e-01 | 100.0% | 51.8% |
| 3610209 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.55 | 38.0 | 3.63e-01 | 74.5% | 76.9% |
| 3372175 | 109.4.1.450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 | 0.54 | 39.0 | 2.69e-01 | 84.3% | 23.1% |
| 3926720 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.54 | 39.0 | 3.68e-01 | 80.4% | 66.2% |