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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00386
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00386
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-58
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.68 | 60.0 | 5.03e-01 | 100.0% | 67.0% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 47.0 | 4.49e-01 | 91.4% | 64.7% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 45.0 | 3.41e-01 | 77.6% | 39.1% |
| 2pftA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.61 | 45.0 | 2.60e-01 | 77.6% | 11.4% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.60 | 45.0 | 3.93e-01 | 98.3% | 50.5% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 51.0 | 4.55e-01 | 100.0% | 79.3% |
| 2c42A06 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.60 | 41.0 | 2.52e-01 | 74.1% | 10.9% |
| 4n6cB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.60 | 49.0 | 3.52e-01 | 93.1% | 76.8% |
| 1dvpA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 40.0 | 3.08e-01 | 70.7% | 60.0% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 50.0 | 4.52e-01 | 100.0% | 70.6% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 44.0 | 3.21e-01 | 82.8% | 30.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 49.0 | 4.36e-01 | 100.0% | 77.3% |
| 1ez0B01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 43.0 | 2.69e-01 | 84.5% | 54.8% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 46.0 | 3.25e-01 | 100.0% | 88.2% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.55 | 46.0 | 3.55e-01 | 96.6% | 96.6% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.53 | 39.0 | 3.12e-01 | 79.3% | 63.8% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.52 | 43.0 | 3.84e-01 | 93.1% | 77.6% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 3.10e-01 | 87.9% | 60.7% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 37.0 | 3.70e-01 | 84.5% | 75.8% |
| 2hsnA02 | 1.20.1050.110 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 37.0 | 3.12e-01 | 87.9% | 44.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593206 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.69 | 61.0 | 5.29e-01 | 100.0% | 73.3% |
| 3839514 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.65 | 51.0 | 4.01e-01 | 87.9% | 43.1% |
| 3230949 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.63 | 55.0 | 5.12e-01 | 100.0% | 78.7% |
| 3788441 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.63 | 54.0 | 5.02e-01 | 100.0% | 76.0% |
| 4928083 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.63 | 49.0 | 3.21e-01 | 87.9% | 28.2% |
| 3744736 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.61 | 49.0 | 2.85e-01 | 89.7% | 15.6% |
| 3261923 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.61 | 48.0 | 3.61e-01 | 87.9% | 60.0% |
| 3971939 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.58 | 48.0 | 4.39e-01 | 100.0% | 70.6% |
| 3422463 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.58 | 47.0 | 3.96e-01 | 94.8% | 66.7% |
| 3304034 | 5050.1.1.42 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › GDT1 | 0.57 | 43.0 | 2.99e-01 | 82.8% | 71.2% |
| 3008422 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 44.0 | 3.90e-01 | 93.1% | 62.4% |
| 4139865 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 44.0 | 2.96e-01 | 93.1% | 26.5% |
| 3481034 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.52 | 43.0 | 3.96e-01 | 100.0% | 75.0% |
D2
medium
residues 73-122
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xb4B01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.60 | 43.0 | 3.41e-01 | 78.0% | 84.6% |
| 5czdB00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.57 | 39.0 | 3.40e-01 | 70.0% | 71.4% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 46.0 | 2.89e-01 | 100.0% | 22.3% |
| 5k6lA01 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.51 | 37.0 | 2.34e-01 | 76.0% | 82.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607149 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.64 | 46.0 | 3.07e-01 | 76.0% | 28.6% |
| 2406142 | 101.1.2.60 ↗ | alpha arrays › HTH › HTH › winged helix domain › HA2_N | 0.63 | 45.0 | 3.97e-01 | 76.0% | 76.7% |
| 3729428 | 101.1.2.60 ↗ | alpha arrays › HTH › HTH › winged helix domain › HA2_N | 0.63 | 45.0 | 4.12e-01 | 76.0% | 87.7% |
| 3403625 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 44.0 | 4.19e-01 | 76.0% | 93.3% |
| 3598777 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.61 | 43.0 | 2.88e-01 | 76.0% | 26.5% |
| 3787860 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 3.94e-01 | 76.0% | 83.1% |
| 5006995 | 2003.1.7.11 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › AcetylCoA_hyd_C | 0.57 | 44.0 | 2.88e-01 | 96.0% | 44.7% |
| 3491594 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 43.0 | 3.44e-01 | 92.0% | 90.0% |
| 3193565 | 101.1.2.77 ↗ | alpha arrays › HTH › HTH › winged helix domain › ESCRT-II | 0.54 | 45.0 | 3.52e-01 | 96.0% | 54.8% |
| 3672461 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.52 | 40.0 | 2.59e-01 | 86.0% | 86.1% |