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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00423

Bact-Vir

BML_coassembly_scaffold_69_prodigal-single.1__X__X__00423

Identity

Kingdom:
phage

Quality

96.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 4.23e-01 98.4% 55.6%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.69 54.0 3.80e-01 86.9% 60.4%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.67 52.0 3.69e-01 86.9% 58.9%
5teaB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.66 47.0 3.38e-01 100.0% 26.4%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 50.0 3.55e-01 85.2% 59.6%
4lugB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.65 47.0 3.34e-01 100.0% 26.1%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 50.0 3.45e-01 85.2% 54.1%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.64 55.0 4.66e-01 100.0% 71.7%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.64 50.0 3.37e-01 86.9% 40.6%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 48.0 3.39e-01 85.2% 58.7%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 54.0 4.29e-01 100.0% 63.9%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 53.0 3.64e-01 95.1% 91.9%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 45.0 4.86e-01 88.5% 97.9%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 48.0 3.45e-01 86.9% 61.3%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 47.0 3.33e-01 85.2% 63.7%
3eesA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 53.0 4.22e-01 100.0% 63.4%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.61 52.0 3.70e-01 98.4% 76.4%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 4.22e-01 100.0% 64.0%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.61 51.0 3.55e-01 95.1% 45.1%
3f13B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 4.02e-01 100.0% 49.0%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.57e-01 98.4% 92.2%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.60 46.0 3.30e-01 86.9% 57.8%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 4.42e-01 98.4% 89.4%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 47.0 4.16e-01 100.0% 58.1%
3grnA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 51.0 4.00e-01 100.0% 61.6%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.59 51.0 3.80e-01 98.4% 60.0%
4v19O00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.59 51.0 4.20e-01 100.0% 64.3%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 47.0 3.80e-01 100.0% 61.5%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 49.0 3.93e-01 100.0% 64.9%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 48.0 3.98e-01 100.0% 63.6%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.75e-01 100.0% 61.1%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 49.0 4.57e-01 100.0% 90.8%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 47.0 3.75e-01 100.0% 63.5%
5zwlE01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 48.0 4.34e-01 100.0% 87.5%
1e9gB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.56 47.0 3.05e-01 100.0% 20.5%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 42.0 3.06e-01 88.5% 95.7%
3f8uB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.84e-01 100.0% 78.2%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 39.0 2.99e-01 80.3% 44.2%
5wrtB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.55 48.0 3.22e-01 100.0% 25.9%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 39.0 3.29e-01 96.7% 43.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.01e-01 100.0% 71.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 40.0 3.24e-01 86.9% 80.7%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.53 44.0 3.65e-01 100.0% 94.5%
6j09A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 45.0 4.38e-01 98.4% 92.5%
6we5A00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.52 46.0 3.15e-01 100.0% 31.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3193754 2.1.1.87 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RPA43_OB 0.75 51.0 4.10e-01 70.5% 75.4%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.73 50.0 4.74e-01 72.1% 61.3%
3826141 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 4.24e-01 70.5% 64.4%
4535633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 48.0 4.49e-01 100.0% 57.3%
3926921 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 60.0 4.33e-01 100.0% 47.1%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.68 42.0 3.74e-01 72.1% 44.7%
4586448 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.68 52.0 3.79e-01 85.2% 49.4%
7440 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.67 52.0 3.69e-01 86.9% 58.9%
3784334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 39.0 3.98e-01 72.1% 60.0%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 42.0 3.72e-01 72.1% 43.3%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 56.0 5.04e-01 98.4% 68.2%
3492680 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 53.0 4.28e-01 88.5% 73.3%
4192972 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 57.0 4.79e-01 98.4% 75.2%
4294371 237.1.1.14 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Anthrax-tox_M 0.66 49.0 3.23e-01 83.6% 42.1%
308110 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.65 50.0 3.48e-01 85.2% 54.6%
4017905 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.65 44.0 3.98e-01 70.5% 100.0%
5054112 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.26e-01 100.0% 83.1%
3947390 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.65 46.0 3.38e-01 100.0% 27.9%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 55.0 4.82e-01 98.4% 63.3%
4868829 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.65 53.0 4.28e-01 91.8% 75.8%
4988604 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 58.0 4.75e-01 100.0% 71.8%
5036377 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 4.43e-01 96.7% 68.0%
7439 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.64 50.0 3.57e-01 88.5% 97.1%
2557339 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.64 54.0 4.63e-01 100.0% 70.4%
3413155 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.28e-01 75.4% 97.3%
5032025 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.67e-01 100.0% 73.3%
5053822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.40e-01 100.0% 71.5%
2034328 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.63 48.0 3.40e-01 85.2% 59.2%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 4.77e-01 100.0% 65.6%
4398032 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.63 48.0 4.02e-01 86.9% 86.1%
3886084 237.1.1.2 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.62 47.0 3.30e-01 85.2% 44.9%
3589736 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 50.0 4.83e-01 88.5% 80.0%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 51.0 4.61e-01 91.8% 95.3%
5064148 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 4.50e-01 100.0% 76.4%
3589952 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.62 52.0 3.76e-01 95.1% 55.7%
4417145 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.62 47.0 4.00e-01 88.5% 85.2%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 54.0 4.84e-01 100.0% 78.8%
3625467 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 51.0 3.93e-01 100.0% 89.0%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.60 44.0 4.49e-01 90.2% 80.0%
5038472 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.38e-01 100.0% 71.8%
428579 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.60 52.0 4.05e-01 98.4% 70.1%
2832652 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.60 51.0 3.65e-01 98.4% 52.1%
5024134 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.60 50.0 3.95e-01 98.4% 71.4%
3938105 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.59 38.0 3.68e-01 100.0% 55.7%
1323508 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.59 40.0 3.06e-01 70.5% 55.1%
1566317 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.59 51.0 3.81e-01 98.4% 60.0%
4033467 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.59 50.0 3.65e-01 98.4% 57.2%
3249895 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 40.0 3.86e-01 72.1% 62.9%
4237901 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.58 50.0 4.44e-01 100.0% 92.2%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.58 46.0 4.11e-01 90.2% 61.1%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 45.0 4.01e-01 90.2% 61.1%
1780166 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.57 49.0 3.16e-01 100.0% 21.7%
4063948 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.57 50.0 4.52e-01 100.0% 90.6%
5012425 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 45.0 3.48e-01 86.9% 45.0%
3968419 11.1.4.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.56 47.0 4.31e-01 100.0% 94.1%
3726200 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.55 47.0 3.04e-01 100.0% 20.7%
3518905 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.45e-01 100.0% 42.4%
4070271 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.54 47.0 4.28e-01 100.0% 90.6%
3977403 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.54 45.0 3.73e-01 100.0% 60.0%
4122369 56.1.1.2 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › PF27304 0.54 47.0 4.26e-01 100.0% 91.8%
2125769 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.52 46.0 2.95e-01 100.0% 21.5%
4635165 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.52 43.0 4.00e-01 100.0% 91.8%
3265492 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.51 45.0 4.45e-01 100.0% 92.3%
3492822 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 38.0 2.45e-01 83.6% 18.6%
3254496 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 40.0 2.63e-01 88.5% 27.6%