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BML_coassembly_scaffold_69_prodigal-single.1__X__X__00431
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00431
Identity
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-65
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.73 | 46.0 | 4.46e-01 | 78.7% | 58.2% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.68 | 57.0 | 5.01e-01 | 100.0% | 61.7% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 57.0 | 5.09e-01 | 100.0% | 66.7% |
| 1v32A00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.67 | 54.0 | 4.63e-01 | 90.2% | 69.3% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.64 | 51.0 | 4.40e-01 | 100.0% | 55.6% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.64 | 48.0 | 3.85e-01 | 80.3% | 86.3% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 57.0 | 5.07e-01 | 100.0% | 76.5% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.62 | 43.0 | 3.87e-01 | 72.1% | 67.1% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 4.44e-01 | 100.0% | 88.0% |
| 4nt1A00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.61 | 50.0 | 3.56e-01 | 100.0% | 28.5% |
| 1ashA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 55.0 | 4.10e-01 | 100.0% | 43.5% |
| 4qclA05 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.61 | 52.0 | 3.89e-01 | 100.0% | 83.9% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 50.0 | 4.69e-01 | 98.4% | 79.7% |
| 4uavA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 48.0 | 4.39e-01 | 100.0% | 68.2% |
| 2hw5A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.57 | 35.0 | 3.60e-01 | 70.5% | 63.2% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 47.0 | 4.50e-01 | 100.0% | 89.7% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 48.0 | 3.78e-01 | 100.0% | 81.8% |
| 3tixA02 | 6.10.140.1690 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 46.0 | 4.38e-01 | 98.4% | 88.6% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 36.0 | 3.49e-01 | 86.9% | 54.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.56 | 46.0 | 4.17e-01 | 100.0% | 75.0% |
| 3wfwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 42.0 | 3.29e-01 | 88.5% | 37.7% |
| 2j5vB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 45.0 | 3.15e-01 | 100.0% | 61.0% |
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.51 | 40.0 | 3.06e-01 | 88.5% | 54.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4378615 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.77 | 59.0 | 6.19e-01 | 100.0% | 90.9% |
| 4984411 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.74 | 64.0 | 4.08e-01 | 100.0% | 21.1% |
| 3353067 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.74 | 64.0 | 5.88e-01 | 96.7% | 73.8% |
| 5057991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 56.0 | 5.40e-01 | 100.0% | 72.9% |
| 5041402 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 51.0 | 5.01e-01 | 100.0% | 72.3% |
| 3167709 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.70 | 62.0 | 5.04e-01 | 100.0% | 53.9% |
| 4975514 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.69 | 54.0 | 5.01e-01 | 100.0% | 67.5% |
| 3791819 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 51.0 | 4.68e-01 | 100.0% | 62.5% |
| 5060192 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 4.91e-01 | 100.0% | 76.9% |
| 3289987 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.64 | 53.0 | 3.82e-01 | 100.0% | 78.5% |
| 4997587 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.64 | 51.0 | 4.05e-01 | 91.8% | 45.2% |
| 5055517 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.64 | 53.0 | 4.22e-01 | 100.0% | 53.6% |
| 5039697 | 2008.1.1.224 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 | 0.63 | 54.0 | 4.43e-01 | 100.0% | 89.9% |
| 4957822 | 2008.1.1.224 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 | 0.62 | 53.0 | 4.25e-01 | 100.0% | 86.8% |
| 3785926 | 101.1.15.3 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung | 0.62 | 49.0 | 4.10e-01 | 91.8% | 56.5% |
| 4972578 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.62 | 50.0 | 4.42e-01 | 100.0% | 59.6% |
| 4998325 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.62 | 51.0 | 4.26e-01 | 100.0% | 64.2% |
| 3822 | 604.4.1.1 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › AHSP | 0.61 | 52.0 | 4.68e-01 | 100.0% | 72.2% |
| 3602853 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.60 | 43.0 | 3.42e-01 | 77.0% | 47.7% |
| 5049110 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.60 | 52.0 | 3.48e-01 | 100.0% | 26.8% |
| 3848681 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.59 | 50.0 | 4.92e-01 | 98.4% | 93.8% |
| 3357973 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.59 | 47.0 | 4.43e-01 | 93.4% | 87.5% |
| 3224983 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.59 | 49.0 | 3.62e-01 | 100.0% | 77.8% |
| 4031486 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.59 | 36.0 | 3.32e-01 | 85.2% | 46.3% |
| 4597634 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.58 | 40.0 | 3.64e-01 | 72.1% | 82.5% |
| 4324922 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.57 | 48.0 | 4.38e-01 | 100.0% | 76.5% |
| 3210129 | 4982.1.1.0 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain | 0.56 | 50.0 | 4.32e-01 | 100.0% | 64.2% |
| 3383049 | 4009.1.1.18 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › FPP | 0.56 | 35.0 | 3.30e-01 | 93.4% | 52.0% |
| 3240772 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.56 | 48.0 | 3.28e-01 | 100.0% | 67.9% |
| 4033046 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.55 | 38.0 | 3.59e-01 | 72.1% | 86.7% |
| 4031489 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.55 | 38.0 | 3.55e-01 | 72.1% | 82.7% |
| 4034220 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.55 | 37.0 | 3.60e-01 | 72.1% | 92.9% |
| 4033051 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.54 | 37.0 | 3.59e-01 | 72.1% | 84.3% |
| 4034224 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.53 | 37.0 | 3.47e-01 | 72.1% | 86.7% |
| 3690687 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.53 | 44.0 | 4.23e-01 | 100.0% | 81.3% |
| 4033044 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.52 | 36.0 | 3.49e-01 | 77.0% | 64.0% |