←Back to structures
BML_coassembly_scaffold_69_prodigal-single.1__X__X__00436
Bact-VirBML_coassembly_scaffold_69_prodigal-single.1__X__X__00436
Identity
- Kingdom:
- phage
Quality
61.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
rep: OQ570641.1__WJZ69682.1__YZUL1_32__00031__D3-58
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.63 | 54.0 | 4.51e-01 | 100.0% | 80.4% |
| 6sxtA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 52.0 | 3.93e-01 | 98.4% | 95.1% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.62 | 40.0 | 4.75e-01 | 82.0% | 100.0% |
| 1ou5A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 31.0 | 2.36e-01 | 100.0% | 20.0% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 43.0 | 3.28e-01 | 77.0% | 95.9% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.60 | 47.0 | 3.63e-01 | 88.5% | 49.3% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.59 | 44.0 | 2.72e-01 | 82.0% | 58.1% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 46.0 | 4.04e-01 | 95.1% | 90.4% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.57 | 39.0 | 2.66e-01 | 72.1% | 27.7% |
| 5cegD00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 40.0 | 3.43e-01 | 75.4% | 59.4% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 40.0 | 3.34e-01 | 77.0% | 94.7% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 42.0 | 3.75e-01 | 83.6% | 77.9% |
| 3rfoA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.56 | 46.0 | 3.96e-01 | 96.7% | 93.3% |
| 1s3iA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.55 | 41.0 | 3.47e-01 | 78.7% | 93.1% |
| 3mtvA01 | 2.30.31.30 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Arterivirus nps1beta, nuclease domain | 0.55 | 37.0 | 3.45e-01 | 70.5% | 81.2% |
| 2epjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 37.0 | 2.72e-01 | 70.5% | 72.7% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.54 | 43.0 | 3.59e-01 | 93.4% | 72.6% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.51 | 40.0 | 2.66e-01 | 93.4% | 80.9% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.51 | 37.0 | 3.46e-01 | 86.9% | 95.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3005973 | 3484.1.1.2 ↗ | a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 | 0.65 | 55.0 | 4.01e-01 | 98.4% | 49.4% |
| 4389625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.63 | 50.0 | 5.24e-01 | 86.9% | 98.2% |
| 4665793 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.63 | 52.0 | 4.43e-01 | 96.7% | 94.5% |
| 3875127 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.61 | 44.0 | 3.60e-01 | 77.0% | 84.5% |
| 4160295 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.60 | 48.0 | 3.99e-01 | 95.1% | 93.5% |
| 3275683 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 46.0 | 3.62e-01 | 88.5% | 63.4% |
| 4383764 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.59 | 48.0 | 4.03e-01 | 93.4% | 94.5% |
| 3405206 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.59 | 44.0 | 3.30e-01 | 83.6% | 68.5% |
| 4464028 | 633.23.1.37 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 | 0.58 | 46.0 | 3.14e-01 | 88.5% | 71.7% |
| 4041967 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.58 | 46.0 | 3.89e-01 | 91.8% | 90.0% |
| 4654684 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.58 | 46.0 | 3.96e-01 | 95.1% | 92.7% |
| 3796870 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.57 | 43.0 | 3.50e-01 | 83.6% | 94.4% |
| 4561631 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.56 | 46.0 | 3.99e-01 | 96.7% | 93.3% |
| 3576044 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.56 | 43.0 | 3.43e-01 | 86.9% | 85.7% |
| 1384885 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.56 | 42.0 | 3.84e-01 | 83.6% | 84.1% |
| 4664147 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.56 | 44.0 | 3.74e-01 | 90.2% | 92.7% |
| 3936755 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 43.0 | 3.35e-01 | 86.9% | 86.9% |
| 4508593 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.55 | 45.0 | 3.81e-01 | 96.7% | 91.3% |
| 4233148 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.55 | 45.0 | 3.86e-01 | 96.7% | 90.9% |
| 3830098 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.55 | 39.0 | 2.32e-01 | 73.8% | 34.2% |
| 4668700 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.55 | 44.0 | 3.82e-01 | 96.7% | 93.5% |
| 185792 | 9.17.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipoprotein YedD › Lipoprotein YedD › YedD | 0.54 | 43.0 | 3.59e-01 | 93.4% | 72.6% |
| 3699252 | 633.23.1.23 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin | 0.52 | 38.0 | 2.90e-01 | 86.9% | 67.9% |
| 4928595 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.52 | 38.0 | 3.28e-01 | 91.8% | 46.7% |
| 4955007 | 4025.1.1.0 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit | 0.52 | 42.0 | 2.80e-01 | 91.8% | 67.1% |
| 5046610 | 4025.1.1.0 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit | 0.51 | 42.0 | 2.82e-01 | 91.8% | 70.2% |
| 3485789 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.51 | 36.0 | 2.98e-01 | 75.4% | 52.2% |
| 4596980 | 5093.1.1.0 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | 0.50 | 43.0 | 2.80e-01 | 98.4% | 80.9% |
D2
high
residues 67-155