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BRO-D
Euk-VirLymantria_xylina_nucleopolyhedrovirus
BRO-D__YP_003517808__Lymantria_xylina_nucleopolyhedrovirus__166921
Identity
- Accession:
- YP_003517808 ↗
- Protein ID:
- BRO-D
- Kingdom:
- euk
Quality
77.7
mean pLDDT
Taxonomy
TaxID: 166921
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-94
Domain cluster:
rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 74.3 | 1.40e-20 | 85.0% | 80.2% |
D2
high
residues 250-291_309-322
Domain cluster:
representative
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 51.0 | 3.67e-01 | 100.0% | 25.6% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 47.0 | 3.29e-01 | 100.0% | 20.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.71 | 55.0 | 5.23e-01 | 98.2% | 71.2% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.70 | 51.0 | 3.83e-01 | 100.0% | 30.8% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 45.0 | 3.20e-01 | 100.0% | 21.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 59.0 | 5.34e-01 | 98.2% | 75.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.67 | 44.0 | 3.57e-01 | 98.2% | 33.6% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 52.0 | 3.77e-01 | 94.6% | 31.1% |
| 2dm4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 44.0 | 3.76e-01 | 96.4% | 44.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 53.0 | 4.90e-01 | 100.0% | 76.3% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 45.0 | 3.62e-01 | 96.4% | 39.3% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 45.0 | 3.64e-01 | 80.4% | 78.6% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 53.0 | 4.99e-01 | 100.0% | 85.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 49.0 | 4.28e-01 | 94.6% | 56.5% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 54.0 | 4.84e-01 | 100.0% | 77.2% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 53.0 | 3.27e-01 | 100.0% | 59.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 49.0 | 4.23e-01 | 96.4% | 56.4% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.60 | 51.0 | 3.96e-01 | 100.0% | 72.6% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 42.0 | 3.30e-01 | 100.0% | 31.9% |
| 4lsdF00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 44.0 | 3.73e-01 | 98.2% | 46.9% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 3.81e-01 | 100.0% | 52.9% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.67e-01 | 100.0% | 41.3% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 42.0 | 2.95e-01 | 96.4% | 23.8% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.57 | 46.0 | 3.06e-01 | 100.0% | 21.1% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 48.0 | 3.64e-01 | 100.0% | 59.2% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 44.0 | 3.74e-01 | 100.0% | 49.5% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.55 | 47.0 | 4.06e-01 | 98.2% | 64.1% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 3.99e-01 | 100.0% | 58.8% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.55 | 47.0 | 3.75e-01 | 100.0% | 47.4% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.73e-01 | 100.0% | 50.0% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 45.0 | 3.55e-01 | 100.0% | 57.2% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 46.0 | 3.55e-01 | 96.4% | 44.3% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.92e-01 | 100.0% | 55.4% |
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.53 | 42.0 | 2.95e-01 | 92.9% | 73.9% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.53 | 46.0 | 3.36e-01 | 100.0% | 59.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 42.0 | 3.50e-01 | 96.4% | 50.4% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 41.0 | 2.91e-01 | 83.9% | 93.5% |
| 4d8mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.23e-01 | 100.0% | 52.9% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.25e-01 | 94.6% | 89.3% |
| 7pupA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 2.85e-01 | 100.0% | 23.7% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.81e-01 | 100.0% | 68.4% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.78e-01 | 100.0% | 60.9% |
| 3ec6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.46e-01 | 100.0% | 44.5% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.84e-01 | 100.0% | 63.5% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.52 | 44.0 | 3.55e-01 | 100.0% | 48.7% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.28e-01 | 100.0% | 42.1% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 42.0 | 3.53e-01 | 100.0% | 54.1% |
| 6kjcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 39.0 | 2.37e-01 | 83.9% | 98.1% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.51 | 42.0 | 2.78e-01 | 100.0% | 44.7% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.51e-01 | 100.0% | 53.2% |
| 3g7mA00 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.50 | 37.0 | 2.85e-01 | 100.0% | 31.1% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.68e-01 | 100.0% | 58.9% |
| 5mybA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.61e-01 | 100.0% | 57.3% |
| 4je3B00 | 3.10.20.720 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 42.0 | 3.84e-01 | 96.4% | 90.9% |
ECOD (83)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.72 | 58.0 | 3.98e-01 | 100.0% | 25.5% |
| 3892042 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.72 | 58.0 | 5.04e-01 | 98.2% | 58.8% |
| 4943252 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.71 | 61.0 | 4.47e-01 | 98.2% | 36.6% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.71 | 52.0 | 3.67e-01 | 100.0% | 25.1% |
| 3553704 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.70 | 60.0 | 5.12e-01 | 98.2% | 60.0% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.70 | 49.0 | 4.93e-01 | 100.0% | 76.4% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.69 | 61.0 | 6.07e-01 | 98.2% | 96.6% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 60.0 | 6.04e-01 | 96.4% | 98.2% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.68 | 58.0 | 4.25e-01 | 98.2% | 35.6% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 60.0 | 5.21e-01 | 100.0% | 70.6% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 59.0 | 5.79e-01 | 98.2% | 95.0% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 60.0 | 5.19e-01 | 100.0% | 68.2% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 60.0 | 5.43e-01 | 100.0% | 77.3% |
| 3867707 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.67 | 52.0 | 4.09e-01 | 96.4% | 40.9% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 60.0 | 5.74e-01 | 100.0% | 90.6% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 59.0 | 5.36e-01 | 100.0% | 76.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 57.0 | 5.26e-01 | 98.2% | 76.0% |
| 4298891 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.66 | 58.0 | 3.71e-01 | 98.2% | 30.7% |
| 3396683 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.66 | 54.0 | 4.86e-01 | 100.0% | 65.8% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 57.0 | 5.37e-01 | 98.2% | 81.4% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 57.0 | 5.68e-01 | 98.2% | 98.3% |
| 4983090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 58.0 | 5.18e-01 | 100.0% | 73.4% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 56.0 | 5.63e-01 | 98.2% | 98.3% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 57.0 | 5.55e-01 | 100.0% | 92.1% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 57.0 | 4.61e-01 | 100.0% | 77.1% |
| 3734638 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.65 | 55.0 | 4.50e-01 | 100.0% | 52.0% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 57.0 | 4.66e-01 | 100.0% | 55.2% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 56.0 | 4.59e-01 | 100.0% | 53.7% |
| 2527501 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 56.0 | 4.62e-01 | 100.0% | 55.8% |
| 5014684 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 55.0 | 5.50e-01 | 98.2% | 93.1% |
| 5030993 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 56.0 | 5.04e-01 | 100.0% | 72.5% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 55.0 | 4.63e-01 | 100.0% | 57.4% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 55.0 | 5.30e-01 | 98.2% | 93.8% |
| 3467170 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 57.0 | 5.47e-01 | 100.0% | 88.9% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 54.0 | 4.56e-01 | 100.0% | 57.4% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.63 | 53.0 | 5.18e-01 | 92.9% | 85.0% |
| 3196737 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.63 | 52.0 | 4.30e-01 | 100.0% | 51.0% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.63 | 49.0 | 5.07e-01 | 100.0% | 98.0% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.63 | 44.0 | 4.35e-01 | 100.0% | 70.0% |
| 3230319 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.63 | 53.0 | 4.75e-01 | 100.0% | 67.5% |
| 3587744 | 9.9.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 | 0.62 | 53.0 | 4.04e-01 | 100.0% | 98.6% |
| 5038559 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 49.0 | 4.58e-01 | 100.0% | 70.0% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 54.0 | 4.36e-01 | 100.0% | 74.5% |
| 3636893 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 51.0 | 4.24e-01 | 100.0% | 52.0% |
| 3411558 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 54.0 | 4.03e-01 | 98.2% | 48.6% |
| 3928420 | 3680.1.1.0 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain | 0.60 | 43.0 | 3.15e-01 | 75.0% | 96.0% |
| 2870324 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.60 | 50.0 | 4.96e-01 | 98.2% | 94.8% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.59 | 49.0 | 4.18e-01 | 98.2% | 100.0% |
| 3791945 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.59 | 44.0 | 2.94e-01 | 80.4% | 45.8% |
| 3616256 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.59 | 44.0 | 3.63e-01 | 96.4% | 42.7% |
| 3223399 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.59 | 48.0 | 3.33e-01 | 96.4% | 77.1% |
| 3905094 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.59 | 50.0 | 3.78e-01 | 96.4% | 47.4% |
| 4336262 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.58 | 50.0 | 3.07e-01 | 100.0% | 93.2% |
| 3586708 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.58 | 46.0 | 3.08e-01 | 100.0% | 21.3% |
| 3497068 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 50.0 | 4.09e-01 | 100.0% | 52.4% |
| 4935664 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.58 | 44.0 | 3.44e-01 | 100.0% | 38.3% |
| 5001251 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 47.0 | 4.03e-01 | 100.0% | 56.7% |
| 3309702 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.57 | 44.0 | 2.51e-01 | 82.1% | 28.5% |
| 4399538 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 45.0 | 3.77e-01 | 94.6% | 97.3% |
| 3515281 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.57 | 46.0 | 3.82e-01 | 96.4% | 49.5% |
| 3640841 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.57 | 47.0 | 2.91e-01 | 100.0% | 14.9% |
| 4003814 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 49.0 | 3.75e-01 | 100.0% | 85.0% |
| 4044109 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.57 | 48.0 | 3.02e-01 | 100.0% | 94.4% |
| 3214349 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 48.0 | 3.68e-01 | 98.2% | 99.3% |
| 3874656 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 49.0 | 3.55e-01 | 100.0% | 34.5% |
| 3223402 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 3.88e-01 | 100.0% | 52.0% |
| 3514371 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.56 | 46.0 | 3.23e-01 | 96.4% | 51.6% |
| 4955225 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.56 | 46.0 | 3.10e-01 | 100.0% | 32.5% |
| 4374005 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 3.73e-01 | 100.0% | 47.8% |
| 4945424 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 41.0 | 3.23e-01 | 83.9% | 80.0% |
| 5011866 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.54 | 46.0 | 3.12e-01 | 100.0% | 28.9% |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.54 | 45.0 | 3.69e-01 | 100.0% | 71.7% |
| 4146398 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.54 | 41.0 | 2.90e-01 | 82.1% | 97.1% |
| 3446425 | 11.1.1.558 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 | 0.54 | 43.0 | 3.50e-01 | 96.4% | 90.0% |
| 3203256 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 45.0 | 2.75e-01 | 100.0% | 17.3% |
| 3358129 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.53 | 40.0 | 2.27e-01 | 82.1% | 7.2% |
| 3179826 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.53 | 43.0 | 3.48e-01 | 100.0% | 53.6% |
| 3066660 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 43.0 | 3.63e-01 | 100.0% | 53.5% |
| 3548439 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 43.0 | 3.26e-01 | 100.0% | 55.5% |
| 3329759 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.51 | 41.0 | 2.34e-01 | 91.1% | 21.1% |
| 3898147 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.51 | 43.0 | 3.22e-01 | 100.0% | 55.5% |
| 3677917 | 109.3.1.320 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase | 0.51 | 43.0 | 3.28e-01 | 96.4% | 68.9% |
| 4000498 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.04e-01 | 91.1% | 80.0% |
D3
medium
residues 128-189
Domain cluster:
representative