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BRO-F

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

BRO-F__YP_003517810__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:: YP_003517810 ↗
Protein ID:: BRO-F
Kingdom:: euk

Quality

75.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lymantria_xylina_nucleopolyhedrovirus

TaxID: 166921

Cluster

View cluster (6 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-137

PDB

Domain cluster: rep: MH268168.1__AWY10457.1__PFP1_07__00007__D2-95

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	107.6	5.60e-31	82.9%	100.0%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q18X01	3.10.330.40	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.66	28.0	3.64e-01	72.6%	68.6%
3zfnA02	2.30.140.40	Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain	0.57	23.0	3.14e-01	75.2%	71.9%
2h1eA02	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.57	25.0	3.53e-01	75.2%	87.3%
2gu3A01	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	23.0	3.02e-01	72.6%	69.2%
3oe3C00	2.40.128.200	Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor	0.53	37.0	4.21e-01	87.2%	94.3%
3cawA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.52	30.0	3.35e-01	72.6%	72.5%
2af5A01	2.40.128.160	Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like)	0.52	25.0	3.38e-01	77.8%	94.4%
3n8bA00	3.10.450.700	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	30.0	3.63e-01	82.9%	89.3%
4dt4A02	2.40.10.330	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.51	21.0	2.74e-01	88.0%	63.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3163642	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.84	67.0	6.99e-01	94.0%	88.2%
3968916	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.81	62.0	6.57e-01	94.0%	88.6%
4033119	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.80	66.0	7.12e-01	94.9%	100.0%
4954530	101.1.9.143 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM	0.67	57.0	5.83e-01	93.2%	100.0%
3806930	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.64	30.0	3.21e-01	90.6%	49.0%
3832176	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.63	30.0	3.74e-01	90.6%	74.3%
3215728	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.61	28.0	3.77e-01	80.3%	83.3%
5059099	241.2.1.0 ↗	a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like	0.55	27.0	3.07e-01	89.7%	61.4%
3926624	4184.1.1.0 ↗	beta barrels › MFPT repeat › MFPT repeat › MFPT repeat	0.55	22.0	3.13e-01	75.2%	80.0%
3616432	7579.1.1.89 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE	0.52	47.0	3.02e-01	100.0%	88.2%
3926830	214.1.1.0 ↗	a+b two layers › SH2 › SH2 › SH2	0.52	30.0	3.17e-01	88.0%	60.9%
3223830	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	22.0	2.93e-01	72.6%	80.0%

D2 medium residues 183-247

PDB

Domain cluster: representative