←Back to structures

BRO-G

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

BRO-G__YP_003517811__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:: YP_003517811 ↗
Protein ID:: BRO-G
Kingdom:: euk

Quality

79.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lymantria_xylina_nucleopolyhedrovirus

TaxID: 166921

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-140

PDB

Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	43.5	5.60e-11	82.6%	99.0%

D2 high residues 148-242

PDB

Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10544.16 best	T5orf172	21.1	4.90e-04	95.8%	95.9%
PF13455.13	MUG113	22.6	1.70e-04	77.9%	97.3%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2n17A00	3.30.60.30	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.65	33.0	4.09e-01	88.4%	80.4%
2hl7A00	1.10.8.640	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein	0.64	39.0	4.13e-01	95.8%	69.5%
2g8lB01	1.10.8.380	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1	0.63	42.0	4.83e-01	88.4%	95.5%
3tuiD01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	42.0	3.13e-01	96.8%	28.4%
7w01A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	41.0	3.13e-01	96.8%	29.8%
7tchB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	39.0	2.96e-01	96.8%	27.3%
5cvrA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	41.0	4.34e-01	100.0%	95.2%
1oltA02	1.10.10.920	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	39.0	4.18e-01	100.0%	93.8%
3pm9A03	3.30.70.2190	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	43.0	3.99e-01	92.6%	94.2%
2daxA01	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.51	43.0	3.79e-01	93.7%	91.5%
1r6bX03	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.50	31.0	3.19e-01	85.3%	64.8%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3613416	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.82	76.0	6.99e-01	100.0%	82.5%
3597677	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.81	75.0	7.27e-01	100.0%	94.3%
4016088	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.76	70.0	6.78e-01	100.0%	98.1%
3989300	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.75	69.0	6.56e-01	100.0%	93.6%
3683887	102.2.1.0 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH	0.61	41.0	3.96e-01	95.8%	61.9%
4033265	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.60	40.0	3.00e-01	97.9%	27.7%
3394909	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.59	41.0	2.88e-01	96.8%	21.6%
4846309	2004.1.1.7 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,BCA_ABC_TP_C	0.59	40.0	3.02e-01	96.8%	28.2%
4456090	5086.1.1.94 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD	0.58	36.0	2.73e-01	100.0%	26.7%
4930941	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.58	48.0	4.25e-01	91.6%	99.3%
5075279	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.57	41.0	3.84e-01	74.7%	99.1%
3416551	4007.1.1.0 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins	0.55	38.0	4.04e-01	100.0%	83.7%
3650273	3100.1.1.0 ↗	extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin	0.51	46.0	3.57e-01	100.0%	62.9%
4933158	304.6.1.1 ↗	a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C	0.51	41.0	3.07e-01	89.5%	42.6%
3848227	223.2.1.15 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Longin	0.51	45.0	3.92e-01	100.0%	76.0%
4590765	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.51	42.0	3.74e-01	93.7%	95.2%
4978704	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.51	45.0	3.95e-01	100.0%	86.9%
3734537	4009.1.1.3 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12	0.50	37.0	3.72e-01	78.9%	89.0%
4999190	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.50	45.0	4.09e-01	100.0%	96.2%