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BRO-I

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

BRO-I__YP_003517849__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:: YP_003517849 ↗
Protein ID:: BRO-I
Kingdom:: euk

Quality

80.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lymantria_xylina_nucleopolyhedrovirus

TaxID: 166921

Cluster

View cluster (47 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91

PDB

Domain cluster: rep: MH268168.1__AWY10457.1__PFP1_07__00007__D2-95

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	74.7	1.00e-20	86.7%	81.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hplA00	3.10.260.40	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › BCL-6 corepressor, PCGF1 binding domain	0.61	51.0	4.73e-01	92.2%	86.7%
1vl7A00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.59	49.0	4.29e-01	90.0%	85.2%
4f3nA00	3.40.50.12710	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.59	44.0	3.00e-01	82.2%	84.0%
5yjlD01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.55	45.0	3.92e-01	90.0%	69.7%
1irxA02	2.30.30.300	Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like	0.51	24.0	3.12e-01	88.9%	86.0%
2i3dB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	39.0	2.94e-01	82.2%	92.2%
2g7jA00	3.90.1150.40	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002	0.51	44.0	4.11e-01	97.8%	89.3%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033119	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.88	67.0	6.46e-01	96.7%	71.0%
3163642	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.84	70.0	6.46e-01	100.0%	71.8%
4954530	101.1.9.143 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM	0.68	58.0	5.40e-01	96.7%	84.3%
4008588	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.64	55.0	5.19e-01	94.4%	81.8%
5053202	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.64	30.0	4.15e-01	96.7%	100.0%
4423306	4.1.1.32 ↗	beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID	0.61	30.0	3.32e-01	72.2%	56.0%
3981665	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	45.0	4.22e-01	85.6%	88.2%
4189267	3604.1.1.0 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain	0.57	33.0	3.96e-01	93.3%	88.3%
3479395	64.1.1.0 ↗	beta meanders › WW domain-like › WW domain › WW domain	0.56	22.0	3.43e-01	85.6%	100.0%
3215728	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.55	30.0	3.52e-01	95.6%	76.7%
5037381	375.1.1.19 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD	0.54	27.0	3.44e-01	90.0%	84.0%
3216164	206.1.2.3 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK	0.54	46.0	3.38e-01	100.0%	82.9%
3883088	252.1.1.1 ↗	a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD	0.54	31.0	3.46e-01	80.0%	72.9%
3455026	4325.1.1.0 ↗	mixed a+b and a/b › YegP-like › YegP-like › YegP-like	0.53	30.0	3.73e-01	97.8%	98.0%
3925225	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.52	22.0	3.19e-01	87.8%	97.1%
3926099	269.1.1.1 ↗	a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C	0.52	43.0	3.11e-01	90.0%	94.8%
4931302	802.1.1.0 ↗	a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160	0.51	25.0	3.17e-01	75.6%	80.0%
3962601	172.1.1.0 ↗	alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase	0.51	39.0	2.56e-01	83.3%	95.5%
3483806	295.1.1.3 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA	0.51	37.0	3.18e-01	77.8%	84.7%
3195250	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.50	37.0	2.89e-01	78.9%	65.7%

D2 high residues 142-233

PDB

Domain cluster: representative

D3 high residues 241-335

PDB

Domain cluster: rep: BV_ODV-E26__YP_009666490__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D138-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12299.14 best	DUF3627	45.0	1.30e-11	74.7%	78.5%