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BRO-g

Euk-Vir

Mamestra_configurata_nucleopolyhedrovirus_A

BRO-g__NP_613206__Mamestra_configurata_nucleopolyhedrovirus_A__207830

Identity

Accession:
NP_613206 ↗
Protein ID:
BRO-g
Kingdom:
euk

Quality

77.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_configurata_nucleopolyhedrovirus_A

TaxID: 207830

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-120
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 74.5 1.20e-20 82.2% 92.7%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.62 46.0 4.85e-01 87.3% 87.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 25.0 3.73e-01 72.0% 93.8%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.54 39.0 3.61e-01 100.0% 57.7%
2q0xA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.92e-01 100.0% 30.7%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 25.0 2.90e-01 74.6% 57.8%
2yt7A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 30.0 3.42e-01 94.9% 74.7%
1wh1A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 29.0 3.31e-01 94.1% 72.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 24.0 3.27e-01 99.2% 94.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.83 68.0 7.17e-01 100.0% 96.2%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.80 68.0 7.08e-01 100.0% 96.4%
4944756 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.67 34.0 4.55e-01 99.2% 96.7%
4954530 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.65 57.0 5.85e-01 96.6% 100.0%
3624148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 50.0 5.17e-01 96.6% 90.9%
3731164 101.1.9.37 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › CRC_subunit 0.61 47.0 4.78e-01 89.8% 83.3%
3192917 101.1.9.37 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › CRC_subunit 0.61 47.0 4.47e-01 89.8% 68.8%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.59 54.0 4.95e-01 99.2% 92.7%
5027780 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 29.0 3.88e-01 71.2% 91.7%
3506512 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.58 29.0 3.29e-01 70.3% 62.2%
4027329 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.95e-01 71.2% 92.8%
3349352 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.55 48.0 4.10e-01 99.2% 59.5%
5052270 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 34.0 3.70e-01 95.8% 83.2%
3483335 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 45.0 2.87e-01 97.5% 33.6%
3246475 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.50 44.0 2.87e-01 97.5% 34.1%
3645975 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.50 42.0 3.51e-01 100.0% 51.2%
3242087 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.50 44.0 2.86e-01 97.5% 33.3%
D2 high residues 126-234
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 35.3 1.90e-08 82.6% 91.8%
PF13455.13 MUG113 47.7 2.70e-12 69.7% 93.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3otdA00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.60 44.0 3.47e-01 77.1% 82.5%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 40.0 4.44e-01 80.7% 100.0%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.86e-01 72.5% 100.0%
1urrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.82e-01 73.4% 100.0%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 36.0 3.78e-01 96.3% 82.1%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 43.0 3.48e-01 90.8% 84.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740549 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.84 71.0 6.32e-01 89.0% 84.5%
3597677 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.82 72.0 7.33e-01 92.7% 95.2%
3613416 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.82 71.0 6.89e-01 92.7% 83.3%
4671238 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.76 66.0 5.18e-01 90.8% 58.6%
3738592 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.75 64.0 5.50e-01 89.9% 67.9%
3847297 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.73 63.0 5.56e-01 91.7% 74.8%
4249713 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 63.0 4.72e-01 91.7% 46.0%
3611689 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.73 62.0 5.19e-01 90.8% 64.4%
3596216 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.72 61.0 5.34e-01 90.8% 72.5%
3666940 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 54.0 5.21e-01 80.7% 71.7%
3589228 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 51.0 4.39e-01 80.7% 66.3%
3504586 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 37.0 3.26e-01 89.9% 43.2%
4025260 304.110.1.0 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.56 40.0 3.93e-01 75.2% 87.5%
4971633 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.55 47.0 3.77e-01 95.4% 92.9%
3993653 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.55 48.0 3.58e-01 100.0% 54.0%
3388854 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.53 47.0 3.55e-01 97.2% 61.6%
3482354 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.51 40.0 3.51e-01 100.0% 55.8%
3455885 101.1.9.118 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Auxin_inducible 0.51 31.0 3.68e-01 86.2% 100.0%