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BX571876.1__CAE14720.1__LE1-0038__00038

Bact-Vir

BX571876.1__CAE14720.1__LE1-0038__00038

Identity

Accession:
BX571876 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.64 31.0 3.94e-01 76.2% 80.0%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 50.0 4.04e-01 87.3% 69.8%
1kw3B01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 42.0 3.34e-01 88.9% 34.1%
1mpyA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 40.0 3.07e-01 88.9% 28.9%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.57 46.0 3.95e-01 90.5% 55.2%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 41.0 3.30e-01 81.0% 45.9%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 2.88e-01 93.7% 57.8%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.31e-01 73.0% 58.2%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.55 40.0 2.94e-01 96.8% 26.8%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.54 46.0 3.54e-01 93.7% 59.7%
2bcqA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 45.0 3.70e-01 95.2% 88.6%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.54 43.0 4.35e-01 96.8% 88.9%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.53 41.0 3.44e-01 90.5% 45.5%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 47.0 3.48e-01 98.4% 81.2%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 3.37e-01 93.7% 77.1%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.52 37.0 3.18e-01 77.8% 69.6%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 40.0 2.64e-01 90.5% 47.0%
6ixyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.02e-01 81.0% 64.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3663984 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.73 45.0 3.15e-01 98.4% 20.5%
4330018 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.66 45.0 4.20e-01 85.7% 58.7%
2048220 223.1.1.96 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_2 0.66 45.0 3.44e-01 71.4% 75.5%
3581025 376.1.2.15 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › SOS1_NGEF_PH 0.63 40.0 2.90e-01 96.8% 25.6%
3724868 2008.1.1.82 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 0.63 54.0 3.82e-01 100.0% 41.4%
3239667 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 48.0 2.72e-01 100.0% 7.4%
3409665 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 51.0 3.23e-01 93.7% 20.6%
3738064 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.59 42.0 3.74e-01 79.4% 52.0%
4506352 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.28e-01 95.2% 66.3%
3475221 5.1.5.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd 0.58 39.0 2.51e-01 81.0% 13.0%
3284582 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.57 45.0 3.49e-01 90.5% 37.3%
5022449 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 48.0 3.33e-01 93.7% 59.5%
3790600 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.56 39.0 2.96e-01 74.6% 46.7%
3640795 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 42.0 2.93e-01 88.9% 24.2%
3772995 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.55 44.0 3.66e-01 93.7% 50.4%
3577447 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 42.0 3.75e-01 87.3% 79.8%
3724381 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 44.0 3.62e-01 100.0% 87.6%
3980522 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.55 37.0 2.57e-01 71.4% 55.1%
1681454 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.55 43.0 3.72e-01 95.2% 55.2%
5041727 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 42.0 3.21e-01 87.3% 89.4%
4443803 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 44.0 2.84e-01 87.3% 46.5%
3561967 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 44.0 2.82e-01 90.5% 26.6%
3479571 311.1.1.0 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein 0.52 41.0 2.90e-01 85.7% 58.0%
4360499 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 38.0 3.26e-01 85.7% 45.2%
3240882 2492.1.1.11 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.52 41.0 2.91e-01 95.2% 87.5%
3238801 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 43.0 2.59e-01 100.0% 13.3%
3166912 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.06e-01 93.7% 34.2%
4998245 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 42.0 3.21e-01 93.7% 69.7%
3191760 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 41.0 2.72e-01 90.5% 81.9%
4015072 4096.1.1.0 a+b two layers › NAP-like › NAP-like › NAP-like 0.51 43.0 3.29e-01 100.0% 40.7%
3288021 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.50 35.0 2.68e-01 76.2% 86.1%
D2 medium residues 64-176
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14280.12 best DUF4365 44.4 2.40e-11 95.6% 63.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.70 47.0 4.61e-01 97.3% 63.3%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 49.0 4.80e-01 99.1% 67.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 37.0 3.22e-01 87.6% 39.7%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.59 41.0 3.30e-01 71.7% 47.1%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.55 46.0 4.31e-01 92.9% 93.2%
4rcmB00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.54 45.0 4.09e-01 92.0% 85.5%
2jgpA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.53 44.0 3.51e-01 89.4% 68.7%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 43.0 4.35e-01 91.2% 99.1%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 42.0 4.38e-01 88.5% 100.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991180 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.69 47.0 4.49e-01 93.8% 60.8%
5028193 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.67 47.0 4.59e-01 96.5% 64.8%
5010105 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.66 45.0 4.41e-01 93.8% 63.2%
5036502 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.66 39.0 4.10e-01 81.4% 62.9%
5013306 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 58.0 5.14e-01 93.8% 67.7%
4956648 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.66 49.0 4.59e-01 93.8% 64.4%
4524608 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.66 46.0 4.41e-01 91.2% 62.3%
4942264 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.65 45.0 4.42e-01 92.0% 64.8%
4384457 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.64 47.0 4.52e-01 99.1% 66.9%
5013988 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 55.0 5.29e-01 96.5% 80.8%
4946143 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 46.0 4.38e-01 94.7% 63.0%
2074171 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.62 38.0 4.60e-01 85.0% 98.6%
4024774 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.60 38.0 4.45e-01 85.8% 96.0%
4015406 1.1.9.8 beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH 0.59 49.0 4.39e-01 92.0% 89.1%
3787546 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.57 46.0 3.37e-01 91.2% 49.9%
4313132 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.57 46.0 3.61e-01 89.4% 45.5%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 40.0 4.41e-01 81.4% 94.4%
3501498 1.1.9.8 beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH 0.56 47.0 4.14e-01 92.9% 79.4%
3622133 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 45.0 3.54e-01 89.4% 42.8%
None 0.55 45.0 2.97e-01 89.4% 22.0%
3325109 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 45.0 3.63e-01 89.4% 46.4%
4531216 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 45.0 3.54e-01 89.4% 46.3%
3991601 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 45.0 4.02e-01 89.4% 74.8%
4971125 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.72e-01 79.6% 70.0%
3363680 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 45.0 4.59e-01 91.2% 97.3%
4458331 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 44.0 3.52e-01 90.3% 47.2%
3486967 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 47.0 4.33e-01 100.0% 92.0%
189 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 43.0 3.63e-01 89.4% 56.9%
4169706 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 43.0 3.42e-01 89.4% 46.0%
4665306 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 43.0 3.34e-01 89.4% 43.1%
3961825 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.89e-01 79.6% 81.0%
5054836 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.52e-01 80.5% 67.0%
2665335 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 43.0 3.97e-01 91.2% 69.6%
5062114 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 33.0 3.26e-01 75.2% 58.4%
3206012 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 31.0 3.33e-01 85.0% 69.0%
3212018 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 44.0 3.76e-01 97.3% 97.9%
3971942 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.50 42.0 3.56e-01 92.0% 56.4%