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BX571876.1__CAE14767.1__LE1-0066__00066

Bact-Vir

BX571876.1__CAE14767.1__LE1-0066__00066

Identity

Accession:
BX571876 ↗
Kingdom:
phage

Quality

58.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saintgironsvirus› Leptospira_phage_LE1

TaxID: 137511

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-92_104-134
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 60.0 6.44e-01 83.3% 100.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 6.07e-01 85.9% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.74 67.0 6.23e-01 98.7% 80.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 56.0 6.02e-01 80.8% 98.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.73 53.0 5.34e-01 87.2% 76.6%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 53.0 5.65e-01 78.2% 95.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 5.86e-01 80.8% 100.0%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.82e-01 83.3% 82.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.68 51.0 5.64e-01 82.1% 98.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.32e-01 79.5% 93.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.52e-01 87.2% 95.9%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 55.0 5.56e-01 91.0% 98.7%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.66 47.0 3.69e-01 85.9% 33.9%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.74e-01 96.2% 100.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.29e-01 97.4% 47.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 5.02e-01 92.3% 84.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.96e-01 88.5% 88.3%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.19e-01 75.6% 68.8%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.57 41.0 3.02e-01 75.6% 83.3%
1txjA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.56 42.0 3.34e-01 79.5% 100.0%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.61e-01 88.5% 76.1%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.16e-01 98.7% 63.9%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 4.06e-01 97.4% 88.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.39e-01 88.5% 100.0%
5vybA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 43.0 3.56e-01 88.5% 72.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.40e-01 84.6% 94.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.83e-01 75.6% 80.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.49e-01 91.0% 76.5%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.40e-01 85.9% 93.9%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.52 43.0 3.64e-01 93.6% 82.5%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.95e-01 100.0% 54.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 33.0 3.56e-01 70.5% 76.1%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.51 37.0 3.22e-01 78.2% 60.5%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.50 40.0 3.04e-01 87.2% 97.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 40.0 3.39e-01 88.5% 67.9%
1wmzA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 42.0 3.50e-01 93.6% 81.4%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 6.32e-01 82.1% 100.0%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 50.0 5.80e-01 76.9% 90.9%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 61.0 6.65e-01 84.6% 100.0%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.74e-01 80.8% 84.6%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 6.07e-01 80.8% 96.6%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 52.0 5.71e-01 82.1% 86.2%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 57.0 5.42e-01 79.5% 70.0%
4593997 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 51.0 5.57e-01 80.8% 84.6%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.75 55.0 6.23e-01 83.3% 100.0%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 52.0 5.65e-01 83.3% 87.7%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 57.0 5.81e-01 80.8% 85.3%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.74 60.0 6.31e-01 91.0% 95.8%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 57.0 5.96e-01 80.8% 94.3%
4943273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.71e-01 84.6% 89.2%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 58.0 5.96e-01 84.6% 89.3%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 6.22e-01 84.6% 100.0%
4000858 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 55.0 5.83e-01 80.8% 95.7%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 58.0 5.45e-01 85.9% 78.9%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.32e-01 82.1% 82.2%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.72 62.0 5.48e-01 93.6% 75.5%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.99e-01 93.6% 95.3%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.72 64.0 6.07e-01 97.4% 95.6%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.71 53.0 5.61e-01 84.6% 88.6%
4400641 4.1.1.397 ↗ beta barrels › SH3 › SH3 › SH3 › PF29622 0.70 57.0 5.72e-01 87.2% 100.0%
4950222 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.70 56.0 4.99e-01 85.9% 82.7%
3575435 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.70 52.0 4.81e-01 76.9% 65.3%
5052257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 5.06e-01 80.8% 85.0%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 57.0 5.73e-01 89.7% 92.5%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.78e-01 87.2% 100.0%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 46.0 5.02e-01 75.6% 81.5%
3893892 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 53.0 5.27e-01 80.8% 100.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 51.0 5.38e-01 78.2% 100.0%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 59.0 5.58e-01 94.9% 85.3%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.46e-01 91.0% 98.3%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.69 56.0 5.70e-01 85.9% 100.0%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 61.0 4.96e-01 98.7% 88.3%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.08e-01 87.2% 86.2%
3476336 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 55.0 5.84e-01 85.9% 100.0%
3464620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.82e-01 83.3% 100.0%
3581817 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 53.0 5.76e-01 88.5% 100.0%
4000622 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 55.0 4.69e-01 96.2% 55.8%
3419158 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 53.0 5.77e-01 84.6% 100.0%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 6.08e-01 98.7% 100.0%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.67 51.0 5.53e-01 87.2% 98.5%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.67 60.0 5.14e-01 98.7% 72.5%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.35e-01 85.9% 97.5%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.66 54.0 5.49e-01 87.2% 90.7%
3723175 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 59.0 5.67e-01 100.0% 92.2%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.66 51.0 5.40e-01 88.5% 92.9%
3812216 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.66 50.0 5.29e-01 87.2% 91.4%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 55.0 5.65e-01 89.7% 96.0%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 52.0 4.87e-01 97.4% 68.4%
5050857 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.65 55.0 4.57e-01 89.7% 62.3%
2832038 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.65 52.0 4.57e-01 85.9% 79.1%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.36e-01 91.0% 87.1%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.44e-01 92.3% 95.7%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.65 50.0 5.17e-01 83.3% 85.3%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 55.0 4.48e-01 94.9% 78.7%
3253768 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.64 52.0 5.47e-01 85.9% 95.7%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.97e-01 89.7% 80.0%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 51.0 4.53e-01 87.2% 75.5%
5035835 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.63 45.0 5.04e-01 82.1% 96.7%
4275696 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.63 52.0 4.38e-01 92.3% 53.8%
3997935 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 45.0 4.08e-01 76.9% 88.6%
3492018 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.68e-01 92.3% 69.5%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 3.40e-01 93.6% 34.2%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.43e-01 93.6% 63.6%
4169393 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.60 52.0 3.17e-01 98.7% 18.1%
3933166 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.56 45.0 3.63e-01 87.2% 72.4%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 39.0 4.35e-01 74.4% 100.0%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 39.0 3.97e-01 79.5% 96.0%
4159881 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.53 40.0 3.78e-01 83.3% 89.5%
3519803 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.52 41.0 3.14e-01 87.2% 96.3%
3439990 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.52 36.0 3.51e-01 74.4% 82.2%
3366726 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.52 41.0 3.05e-01 85.9% 95.5%
3183098 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 44.0 2.94e-01 100.0% 67.2%
4957983 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.50 38.0 3.38e-01 79.5% 89.1%