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BcLF1

Euk-Vir

Lymphocryptovirus_Macaca_pfe-lcl-E3

BcLF1__YP_010084688__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044

Identity

Accession:: YP_010084688 ↗
Protein ID:: BcLF1
Kingdom:: euk

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› macacine_gammaherpesvirus_10

TaxID: 1716044

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 401-481_1041-1052_1179-1363

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	312.3	1.10e-92	66.9%	13.7%
PF03122.21	Herpes_MCP	85.5	3.10e-24	31.6%	6.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yloE02	2.40.30.40	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2	0.53	14.0	2.44e-01	70.1%	64.3%
4jn7A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.51	22.0	3.14e-01	98.6%	85.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4003056	11.1.1.373 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Lipin_N	0.51	18.0	2.72e-01	98.2%	73.6%

D2 medium residues 48-99_119-188

PDB

D3 medium residues 189-255

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	63.2	1.70e-17	100.0%	4.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.62	52.0	4.48e-01	95.5%	59.8%
1hqoA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	41.0	3.37e-01	73.1%	77.9%
3bvoA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.58	44.0	4.19e-01	89.6%	68.6%
4irnA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.56	38.0	3.21e-01	97.0%	39.5%
4ivfA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	44.0	3.80e-01	92.5%	59.5%
4hbdA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.55	44.0	3.04e-01	91.0%	24.5%
1ry6A00	3.40.850.10	Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain	0.55	45.0	2.94e-01	91.0%	61.4%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.53	38.0	3.37e-01	76.1%	74.5%
1rrmA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.50	42.0	3.09e-01	97.0%	46.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3770675	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.61	48.0	3.24e-01	91.0%	62.4%
3681806	5027.1.1.9 ↗	extended segments › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › DUF641	0.57	50.0	4.14e-01	98.5%	56.7%

D4 medium residues 256-308_363-400_1055-1063_1099-1116

PDB

Domain cluster: rep: ORF25__YP_001129378__Human_gammaherpesvirus_8__37296__D226-302_366-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	34.5	7.30e-09	50.0%	3.8%
PF03122.21	Herpes_MCP	33.9	1.20e-08	40.7%	2.9%

D5 medium residues 482-558

PDB

Domain cluster: rep: BcLF1__YP_001129493__Human_herpesvirus_4_type_2__12509__D484-559

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	54.0	9.80e-15	100.0%	5.2%

D6 medium residues 571-617_812-832_926-1021

PDB

Domain cluster: rep: major_capsid_protein__YP_009046515__Falconid_herpesvirus_1__1510155__D804-839_946-1036

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	96.8	1.10e-27	59.2%	7.2%
PF03122.21	Herpes_MCP	45.4	3.90e-12	31.1%	3.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.91	87.0	5.92e-01	100.0%	90.4%
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.89	85.0	5.85e-01	100.0%	90.2%

D7 medium residues 618-678_833-895

PDB

Domain cluster: rep: ORF42_gene_product__YP_006273022__Equid_alphaherpesvirus_8__39637__D618-684_875-905

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	28.6	4.60e-07	52.4%	5.2%
PF03122.21	Herpes_MCP	85.5	3.00e-24	51.6%	4.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6yz2A01	1.20.120.350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C	0.60	27.0	2.83e-01	90.3%	43.3%
4a8eA02	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.55	33.0	2.90e-01	91.1%	40.2%
7p2yd01	1.10.520.20	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase	0.51	36.0	3.90e-01	82.3%	89.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.86	80.0	5.21e-01	100.0%	62.1%
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.86	81.0	5.13e-01	100.0%	51.7%
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.80	75.0	4.89e-01	100.0%	55.1%

D8 medium residues 727-811_896-925

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uc8A02	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.53	26.0	3.41e-01	90.4%	91.2%
1fu0A00	3.30.1340.10	Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like	0.51	35.0	3.93e-01	100.0%	93.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.88	82.0	5.22e-01	100.0%	39.9%
3760196	241.1.1.17 ↗	a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › RM5_Med14	0.51	31.0	3.16e-01	100.0%	61.8%
4977852	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	35.0	2.88e-01	72.2%	79.1%