Back to structures

BcRF1

Euk-Vir

Lymphocryptovirus_Macaca_pfe-lcl-E3

BcRF1__YP_010084689__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044

Identity

Accession:
YP_010084689 ↗
Protein ID:
BcRF1
Kingdom:
euk

Quality

57.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-112_125-191
PDB
D2 high residues 432-515
PDB
D3 medium residues 197-267
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03043.21 best Herpes_UL87 30.8 1.80e-07 100.0% 12.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 46.0 3.50e-01 77.5% 65.3%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.60 42.0 4.15e-01 88.7% 67.9%
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 47.0 3.32e-01 90.1% 69.7%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 47.0 4.07e-01 95.8% 96.7%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 34.0 3.30e-01 74.6% 51.8%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 45.0 3.82e-01 98.6% 75.8%
1pjqA03 1.10.8.210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain 0.51 41.0 4.23e-01 93.0% 98.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021445 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 57.0 4.87e-01 94.4% 86.1%
5057640 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.59 50.0 3.18e-01 100.0% 66.8%
3632536 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.57 47.0 4.54e-01 97.2% 94.1%
4410495 605.1.1.206 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Insulin 0.54 48.0 4.44e-01 100.0% 97.8%
3428029 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.52 44.0 3.98e-01 95.8% 97.0%
4031309 4275.1.1.1 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.52 43.0 4.07e-01 94.4% 80.0%
D4 medium residues 268-332
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 4.38e-01 93.8% 85.5%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.65 43.0 4.24e-01 93.8% 63.4%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 43.0 4.17e-01 100.0% 63.2%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.19e-01 93.8% 78.1%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.61 49.0 4.73e-01 93.8% 77.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.11e-01 100.0% 64.6%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 41.0 3.77e-01 93.8% 55.1%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.58 37.0 3.56e-01 93.8% 55.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.58 48.0 4.07e-01 93.8% 94.7%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 3.90e-01 100.0% 67.1%
2edzA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 41.0 3.51e-01 75.4% 92.8%
2esnA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 45.0 3.93e-01 92.3% 91.9%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 44.0 4.21e-01 100.0% 70.9%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.27e-01 100.0% 70.6%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 39.0 3.62e-01 100.0% 56.0%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 38.0 3.46e-01 100.0% 49.5%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.96e-01 100.0% 59.6%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.87e-01 90.8% 98.1%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 4.01e-01 92.3% 75.0%
2gqqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.55 38.0 3.52e-01 100.0% 56.5%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 4.13e-01 100.0% 76.0%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.72e-01 90.8% 91.7%
2z30B00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.54 35.0 3.57e-01 100.0% 66.2%
2cg4A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.54 37.0 3.52e-01 100.0% 57.1%
1utbB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 43.0 3.63e-01 95.4% 81.2%
7ocxC01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 44.0 4.22e-01 100.0% 77.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 39.0 3.04e-01 100.0% 31.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.14e-01 100.0% 36.9%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 43.0 3.81e-01 100.0% 58.8%
2fyiC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 44.0 3.67e-01 98.5% 81.9%
2hvzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 39.0 3.85e-01 100.0% 73.6%
5d77A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 39.0 3.72e-01 100.0% 67.1%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 35.0 2.62e-01 70.8% 50.5%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.94e-01 100.0% 65.7%
2yqrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 44.0 3.81e-01 95.4% 66.0%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 36.0 3.55e-01 93.8% 68.6%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 36.0 3.37e-01 100.0% 57.1%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 39.0 3.63e-01 83.1% 90.5%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 45.0 4.06e-01 100.0% 76.1%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 35.0 3.01e-01 100.0% 40.4%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 34.0 2.14e-01 72.3% 92.8%
4am6A02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 38.0 2.91e-01 81.5% 91.6%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 42.0 3.75e-01 100.0% 74.8%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3726634 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 47.0 4.46e-01 93.8% 62.5%
5056042 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.63 45.0 4.38e-01 100.0% 68.0%
3532622 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 4.33e-01 93.8% 80.0%
3478042 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 4.16e-01 92.3% 82.5%
4352897 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.60 47.0 4.51e-01 100.0% 74.7%
3801400 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 3.31e-01 93.8% 36.6%
3847345 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 4.18e-01 92.3% 96.2%
3253973 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.60e-01 92.3% 61.8%
4887048 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.59 44.0 4.25e-01 100.0% 73.0%
3517855 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 46.0 4.39e-01 93.8% 74.7%
3570680 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 46.0 2.89e-01 90.8% 28.5%
4034167 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.57 46.0 3.97e-01 93.8% 77.4%
4951601 304.24.1.37 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.57 39.0 3.96e-01 100.0% 72.3%
4927268 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.57 43.0 4.02e-01 95.4% 66.3%
4302446 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 42.0 3.75e-01 93.8% 54.7%
4019913 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 51.0 4.26e-01 100.0% 75.9%
4297401 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.56 43.0 4.09e-01 100.0% 70.0%
3232593 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 38.0 3.55e-01 73.8% 94.4%
3873956 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.52e-01 86.2% 84.2%
3900116 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 3.69e-01 90.8% 88.7%
3959836 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 37.0 3.83e-01 89.2% 76.7%
4027654 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 41.0 3.96e-01 93.8% 70.7%
4058358 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.55 44.0 4.16e-01 90.8% 78.8%
4979333 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.54 37.0 3.57e-01 100.0% 60.0%
3963920 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.54 37.0 3.32e-01 100.0% 48.0%
4981472 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.54 37.0 3.48e-01 100.0% 56.5%
4964899 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.54 37.0 3.40e-01 100.0% 53.3%
4972094 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.54 37.0 3.46e-01 100.0% 56.5%
4933084 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.53 37.0 3.45e-01 100.0% 56.5%
3497053 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.53 40.0 3.58e-01 100.0% 54.3%
3397439 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.66e-01 96.9% 92.8%
5010214 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 35.0 3.27e-01 100.0% 51.1%
3494897 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 39.0 3.46e-01 100.0% 51.8%
3214168 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.44e-01 92.3% 88.0%
4028765 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 38.0 3.72e-01 100.0% 76.0%
D5 medium residues 521-622
PDB
D6 medium residues 623-679
PDB
D7 medium residues 680-748
PDB