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C147L

Euk-Vir

African_swine_fever_virus

C147L__YP_009703125__African_swine_fever_virus__10497

Identity

Accession:
YP_009703125 ↗
Protein ID:
C147L
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-140
PDB
Domain cluster: rep: hypothetical_protein_BNJ_00132__YP_009352544__Kaumoebavirus_Viruses.__X__D56-158
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01192.28 best RNA_pol_Rpb6 35.8 9.20e-09 63.1% 98.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zs9F01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.91 87.0 8.09e-01 100.0% 83.0%
2pmzK00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.81 67.0 6.81e-01 88.1% 89.0%
5uagE00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.80 50.0 4.97e-01 79.8% 60.7%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.62 34.0 4.15e-01 84.5% 86.5%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 32.0 3.42e-01 79.8% 57.1%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.57 33.0 3.92e-01 76.2% 87.3%
3f1iS00 1.20.5.1940 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 27.0 2.85e-01 86.9% 49.4%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 33.0 3.59e-01 90.5% 68.1%
2krxA01 3.90.940.40 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 0.55 43.0 4.67e-01 84.5% 100.0%
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.55 44.0 3.36e-01 96.4% 38.0%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.53 45.0 4.43e-01 90.5% 83.5%
5izdA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.50 39.0 3.14e-01 88.1% 92.7%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.50 40.0 3.69e-01 89.3% 74.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615458 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.95 87.0 8.26e-01 100.0% 84.2%
4877200 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.94 90.0 8.05e-01 100.0% 77.1%
1879413 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.91 83.0 8.25e-01 100.0% 93.0%
5027764 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.90 69.0 7.38e-01 84.5% 89.3%
3712185 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.89 74.0 7.89e-01 97.6% 97.3%
4928607 152.1.2.0 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit 0.89 65.0 7.43e-01 79.8% 100.0%
4942049 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.89 73.0 7.75e-01 89.3% 96.0%
5000320 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.86 74.0 7.53e-01 90.5% 92.8%
4946274 152.1.1.0 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 0.86 76.0 7.79e-01 94.0% 97.5%
4406284 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.86 56.0 6.11e-01 81.0% 80.0%
134860 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.81 68.0 6.87e-01 88.1% 89.0%
4074990 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.81 53.0 4.95e-01 79.8% 56.0%
3587412 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.80 53.0 5.78e-01 79.8% 81.4%
4091157 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.78 56.0 5.67e-01 88.1% 74.1%
4078439 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.77 52.0 5.92e-01 85.7% 90.8%
4285299 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.66 34.0 3.54e-01 79.8% 52.5%
3230930 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.64 43.0 4.33e-01 86.9% 68.2%
3297133 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.61 42.0 4.47e-01 84.5% 80.0%
3166208 3121.1.1.4 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_TamA_1 0.58 31.0 3.21e-01 84.5% 55.0%
1409253 6167.1.1.0 ↗ 0.57 42.0 2.91e-01 81.0% 91.2%
3694094 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.52 44.0 3.21e-01 100.0% 33.9%
1118611 103.9.1.1 ↗ alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP 0.51 43.0 4.26e-01 89.3% 84.3%