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C3_protein
Euk-VirApple_geminivirus_1
C3_protein__YP_009129270__Apple_geminivirus_1__2843704
Identity
- Accession:
- YP_009129270 ↗
- Protein ID:
- C3_protein
- Kingdom:
- euk
Quality
82.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Maldovirus›
Maldovirus_mali
TaxID: 2843704
Cluster
View cluster (386 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-123
Domain cluster:
rep: AC3__YP_009506535__Tomato_leaf_curl_New_Delhi_virus_4__2049944__D13-132
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01407.22 best | Gemini_AL3 | 91.3 | 5.80e-26 | 96.5% | 85.7% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mg1B02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 35.0 | 3.37e-01 | 92.9% | 45.6% |
| 3c5iD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.65 | 35.0 | 4.11e-01 | 97.3% | 76.3% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 38.0 | 3.61e-01 | 94.7% | 50.4% |
| 1c7hA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 33.0 | 3.23e-01 | 87.6% | 45.5% |
| 5w3xD01 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.63 | 30.0 | 3.86e-01 | 85.8% | 78.5% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 34.0 | 3.34e-01 | 95.6% | 47.2% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 35.0 | 3.46e-01 | 92.9% | 50.4% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 34.0 | 3.40e-01 | 92.0% | 52.1% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 34.0 | 3.33e-01 | 94.7% | 50.4% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 33.0 | 3.10e-01 | 93.8% | 43.5% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 34.0 | 3.21e-01 | 88.5% | 47.0% |
| 3rgaA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 34.0 | 3.24e-01 | 92.0% | 48.1% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 34.0 | 3.22e-01 | 92.0% | 49.6% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 32.0 | 2.99e-01 | 91.2% | 42.1% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.57 | 42.0 | 4.08e-01 | 77.0% | 100.0% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 33.0 | 3.04e-01 | 94.7% | 42.4% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 3.28e-01 | 92.0% | 50.0% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 33.0 | 3.11e-01 | 92.0% | 45.4% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 4.04e-01 | 71.7% | 87.2% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 35.0 | 3.55e-01 | 100.0% | 60.9% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 32.0 | 3.14e-01 | 93.8% | 49.6% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.56 | 26.0 | 3.03e-01 | 86.7% | 57.0% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 39.0 | 3.62e-01 | 92.9% | 59.1% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.23e-01 | 92.0% | 53.4% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.54 | 40.0 | 3.35e-01 | 80.5% | 68.4% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 40.0 | 3.95e-01 | 78.8% | 79.7% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.70e-01 | 89.4% | 58.3% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 3.34e-01 | 89.4% | 86.7% |
| 1w0pA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 41.0 | 2.90e-01 | 88.5% | 32.6% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.23e-01 | 84.1% | 49.2% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 41.0 | 2.81e-01 | 87.6% | 35.1% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 36.0 | 3.24e-01 | 96.5% | 52.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3702530 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.71 | 34.0 | 3.79e-01 | 92.0% | 56.7% |
| 3692485 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.64 | 35.0 | 3.12e-01 | 92.0% | 37.7% |
| 6400 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.63 | 36.0 | 3.55e-01 | 92.9% | 52.5% |
| 3515333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 37.0 | 4.15e-01 | 92.0% | 74.4% |
| 5002369 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 36.0 | 3.66e-01 | 97.3% | 55.7% |
| 3960415 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 36.0 | 3.56e-01 | 92.9% | 53.3% |
| 3384215 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 38.0 | 4.72e-01 | 75.2% | 100.0% |
| 3229281 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.61 | 35.0 | 3.44e-01 | 93.8% | 51.7% |
| 3738775 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.61 | 50.0 | 4.73e-01 | 86.7% | 88.1% |
| 3422361 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 36.0 | 4.37e-01 | 92.0% | 89.3% |
| 4023469 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.60 | 41.0 | 3.86e-01 | 70.8% | 61.4% |
| 4177430 | 7520.1.1.1 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA | 0.60 | 44.0 | 3.98e-01 | 76.1% | 95.3% |
| 4022036 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.59 | 35.0 | 2.95e-01 | 92.0% | 35.0% |
| 3414096 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 49.0 | 4.70e-01 | 88.5% | 89.2% |
| 3931232 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 41.0 | 3.99e-01 | 100.0% | 64.0% |
| 3472001 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 46.0 | 4.57e-01 | 81.4% | 91.3% |
| 3764790 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 35.0 | 3.83e-01 | 98.2% | 71.6% |
| 3965322 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 39.0 | 4.14e-01 | 89.4% | 81.1% |
| 3971296 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.58 | 34.0 | 3.23e-01 | 92.9% | 50.4% |
| 3238560 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 38.0 | 3.54e-01 | 93.8% | 53.1% |
| 3221640 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.57 | 39.0 | 3.60e-01 | 92.9% | 55.7% |
| 3168414 | 4099.1.1.46 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 | 0.57 | 39.0 | 3.77e-01 | 81.4% | 63.2% |
| 3503101 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.56 | 39.0 | 3.50e-01 | 93.8% | 52.3% |
| 3219090 | 243.1.1.47 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 | 0.56 | 38.0 | 3.68e-01 | 100.0% | 63.4% |
| 3402622 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.55 | 39.0 | 3.62e-01 | 94.7% | 58.6% |
| 1688901 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 32.0 | 3.15e-01 | 92.0% | 50.8% |
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 44.0 | 4.32e-01 | 87.6% | 93.6% |
| 3281948 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.54 | 33.0 | 3.25e-01 | 93.8% | 54.2% |
| 3423894 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.54 | 45.0 | 3.75e-01 | 90.3% | 86.2% |
| 3725114 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 33.0 | 3.06e-01 | 92.0% | 46.9% |
| 3602709 | 241.15.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PF27355 | 0.53 | 38.0 | 3.44e-01 | 75.2% | 72.5% |
| 3703427 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.53 | 36.0 | 3.53e-01 | 98.2% | 65.0% |
| 3482245 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 37.0 | 3.39e-01 | 94.7% | 54.7% |
| 3278632 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.52 | 33.0 | 3.12e-01 | 92.9% | 51.1% |
| 3593049 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 45.0 | 3.63e-01 | 92.0% | 50.0% |
| 3701306 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.52 | 44.0 | 3.60e-01 | 92.0% | 50.0% |
| 3554855 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.50 | 39.0 | 3.28e-01 | 85.0% | 76.7% |
| 4024473 | 243.3.1.20 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 | 0.50 | 36.0 | 3.53e-01 | 72.6% | 80.8% |