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C962R

Euk-Vir

African_swine_fever_virus

C962R__YP_009703127__African_swine_fever_virus__10497

Identity

Accession:
YP_009703127 ↗
Protein ID:
C962R
Kingdom:
euk

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-84
PDB
D2 high residues 90-266
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23162.2 best AEP_C962R 57.3 3.40e-15 78.0% 75.7%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.71 40.0 5.29e-01 100.0% 100.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 38.0 4.94e-01 94.9% 100.0%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 39.0 4.85e-01 100.0% 92.5%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 35.0 4.74e-01 93.8% 100.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 35.0 4.57e-01 70.6% 94.7%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.65 33.0 4.31e-01 88.1% 85.9%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 35.0 4.38e-01 97.7% 88.3%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 35.0 4.51e-01 99.4% 100.0%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 39.0 4.36e-01 93.8% 80.4%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 4.48e-01 98.9% 99.0%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.61 39.0 4.29e-01 97.7% 78.6%
4cyuA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.60 44.0 4.71e-01 95.5% 87.0%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.36e-01 96.0% 99.0%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 36.0 4.45e-01 100.0% 97.2%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 34.0 4.30e-01 93.8% 100.0%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.36e-01 100.0% 97.1%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.59 43.0 4.65e-01 96.6% 88.2%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 25.0 3.69e-01 84.7% 90.8%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 50.0 4.86e-01 92.7% 96.9%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 4.38e-01 97.7% 100.0%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.56 35.0 4.12e-01 78.0% 91.6%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 36.0 4.31e-01 96.0% 100.0%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.55 39.0 4.05e-01 80.2% 77.2%
3dcaA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 3.95e-01 92.7% 85.4%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 33.0 4.07e-01 92.1% 97.3%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 43.0 4.43e-01 89.8% 87.5%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.52 44.0 4.25e-01 90.4% 86.3%
3r8jA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 41.0 4.16e-01 91.0% 83.9%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 29.0 3.71e-01 81.9% 94.2%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 27.0 3.57e-01 88.7% 93.8%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 33.0 3.88e-01 93.2% 96.6%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 33.0 3.88e-01 94.9% 95.8%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 39.0 4.21e-01 91.0% 95.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945381 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 36.0 5.06e-01 94.4% 97.6%
3223328 304.8.1.78 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.71 42.0 5.24e-01 94.9% 96.2%
3220212 304.12.1.11 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › DUF7637 0.70 42.0 5.14e-01 94.9% 94.5%
4510101 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.68 38.0 4.57e-01 97.7% 80.0%
3619535 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.67 42.0 5.07e-01 94.9% 96.5%
4001734 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.66 42.0 5.02e-01 99.4% 96.5%
3993060 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.66 42.0 5.01e-01 93.2% 95.0%
3621982 304.55.1.5 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.64 38.0 4.64e-01 93.2% 91.8%
3715696 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 59.0 5.01e-01 99.4% 69.8%
1124197 304.141.1.1 a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 0.63 42.0 4.86e-01 99.4% 91.5%
4309258 304.55.1.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.63 52.0 4.76e-01 87.6% 81.7%
3588046 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.63 51.0 4.49e-01 85.9% 84.6%
3494040 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 44.0 4.80e-01 98.9% 88.3%
3729608 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 40.0 4.63e-01 95.5% 92.0%
4218099 304.55.1.1 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.61 45.0 5.04e-01 95.5% 97.8%
3791663 304.4.1.52 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 0.60 46.0 4.26e-01 80.2% 100.0%
4932798 304.8.1.81 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.60 47.0 4.75e-01 93.8% 82.9%
3783899 11.2.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.60 32.0 2.87e-01 93.2% 36.7%
3532832 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.60 40.0 4.73e-01 93.8% 100.0%
2391478 304.55.1.5 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.59 34.0 4.30e-01 93.8% 100.0%
3986356 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.59 48.0 4.16e-01 86.4% 80.7%
3797552 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 44.0 4.08e-01 77.4% 100.0%
None 0.58 48.0 4.29e-01 87.6% 90.4%
3411428 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.58 42.0 4.75e-01 98.9% 97.8%
3613691 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 38.0 4.43e-01 94.9% 98.3%
4319983 304.55.1.25 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_1 0.56 48.0 4.38e-01 91.0% 77.4%
4081561 304.8.1.50 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Rep_1 0.56 48.0 4.55e-01 91.0% 82.9%
3987934 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.56 38.0 4.41e-01 98.3% 99.2%
4315665 304.8.1.91 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 0.56 49.0 4.67e-01 93.8% 84.3%
4007464 304.55.1.19 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 0.56 46.0 4.57e-01 88.7% 92.1%
3727195 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.55 37.0 4.34e-01 98.9% 99.2%
3972333 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.55 36.0 4.28e-01 95.5% 99.1%
7321 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.55 44.0 4.55e-01 89.8% 87.0%
3416615 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.55 29.0 3.71e-01 85.3% 85.7%
5009993 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 48.0 4.73e-01 92.7% 100.0%
2798195 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.55 43.0 4.46e-01 100.0% 85.9%
3324106 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.55 42.0 4.26e-01 97.2% 79.4%
3968511 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.54 46.0 4.67e-01 91.0% 98.3%
5077368 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 38.0 4.32e-01 71.2% 100.0%
3185512 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.54 45.0 4.04e-01 90.4% 68.0%
4016257 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.53 45.0 3.91e-01 91.5% 84.7%
3497478 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.53 38.0 3.58e-01 73.4% 97.7%
3724246 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.52 44.0 3.78e-01 90.4% 71.8%
3677529 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.52 43.0 3.67e-01 90.4% 63.1%
3484028 886.1.1.0 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.51 41.0 4.20e-01 91.0% 87.3%
3285005 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.51 41.0 4.19e-01 100.0% 88.2%
3427568 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 43.0 3.64e-01 90.4% 66.6%
3797444 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 27.0 3.41e-01 97.7% 86.7%
D3 high residues 606-830
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 29.5 1.40e-06 52.9% 98.2%
D4 medium residues 292-394
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 53.9 2.70e-14 77.7% 98.7%
D5 medium residues 395-546
PDB
D6 medium residues 547-605
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08706.17 best D5_N 25.3 2.40e-05 96.6% 34.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945876 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.69 61.0 3.93e-01 100.0% 22.6%
4681725 837.1.1.1 a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 0.55 47.0 3.70e-01 100.0% 87.7%
D7 medium residues 863-923
PDB
Domain cluster: representative
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3262645 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.93e-01 100.0% 53.7%
3695273 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 39.0 2.83e-01 73.8% 91.9%
4965087 101.1.2.909 alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.55 35.0 3.45e-01 96.7% 57.1%
3462112 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.54 38.0 3.48e-01 100.0% 54.1%
3169050 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.53 36.0 3.26e-01 72.1% 47.3%
4497605 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.52 40.0 2.62e-01 86.9% 56.2%
3970036 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 40.0 2.61e-01 86.9% 59.4%
3505829 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.52 41.0 3.22e-01 98.4% 37.3%
None 0.52 41.0 2.91e-01 98.4% 97.1%
3643333 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.51 34.0 3.12e-01 95.1% 47.8%